Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5713 163 6e-35 seq5251 149 1e-30 seq4379 149 1e-30 seq12829 134 3e-26 seq9601 118 2e-21 seq9555 118 2e-21 >seq5713 Length=114977 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | ||| ||||||||||| | ||||| |||||| ||||| Sbjct 41004 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCG 40945 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| ||||||||||||||||| ||||| | | || ||||| || Sbjct 40944 GAAAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGG 40885 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| ||||| ||||||||| || | ||| | ||| Sbjct 40884 GGAATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCG 40825 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || |||||||||||||| || ||||| | || ||||||||||| Sbjct 40824 ACTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | ||| ||||||||||| | ||||| ||||||||||| Sbjct 41460 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCG 41401 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || || ||||| | | || ||||| || Sbjct 41400 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 41341 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| || | ||| | ||| Sbjct 41340 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCG 41281 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| |||||||||||||||||||| | || || ||||| Sbjct 41280 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| | || || || || | || | ||||| ||||||||||||||| Sbjct 41685 CCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAG 41626 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | | || || |||||||||||||| ||||| | | |||||||| || || Sbjct 41625 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGA 41566 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| |||||| ||| || || || | ||| | ||| ||| Sbjct 41565 ATTCCTTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACT 41506 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||||||||||||||| | || || ||||| Sbjct 41505 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | ||| ||||||||||| | || || |||||||||||| Sbjct 41232 ATACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCG 41173 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || || ||||| | | || ||||| || Sbjct 41172 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 41113 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| ||||| ||| || || || | ||| | ||| Sbjct 41112 GGAATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCG 41053 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| ||||||||||| || ||||||| || |||||||| Sbjct 41052 ACTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 >seq5251 Length=56147 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || || ||||| ||||| ||||| ||||||||||| ||||||| ||||| || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||||||||||| |||||||||| ||||| || ||||| || ||| ||||||| Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTG 50025 | | |||||| | ||||| | ||| ||||| ||||| | | ||||||||||| Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 50026 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 | ||||| || | | | || || |||| || || || || Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAA 14769 Score = 102 bits (112), Expect = 2e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176 |||||| |||||||||||| |||||| || ||||| ||| ||| || ||| ||||| Sbjct 14891 ATACATCTCAGAATGTACATTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTC 14950 Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236 | | || ||||| | ||| |||||||| || ||||| ||||| |||||||| Sbjct 14951 GGTAACTTGCACTTCTTGATTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGA 15010 Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296 ||||| || || ||||| | || |||||| |||||||| | ||| | | |||| Sbjct 15011 GGCTGCAAAAAAGGCTAAGATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTC 15070 Query 50297 CCAA 50300 |||| Sbjct 15071 CCAA 15074 >seq4379 Length=409 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | ||| ||||||||||| | ||||| ||||||||||| Sbjct 245 ATACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCG 186 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || || ||||| | | || ||||| || Sbjct 185 GAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 126 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| || | ||| | ||| Sbjct 125 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCG 66 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| |||||||||||||||||||| | || || ||||| Sbjct 65 ACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 127 bits (140), Expect = 4e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 192372 TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTAT 192431 ||||| | |||| ||||||||||||||||| ||||| | | || ||||| || || || Sbjct 408 TGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAAT 349 Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 |||||| |||||||| ||||| ||||||||| || | ||| | ||| ||||| Sbjct 348 TCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTC 289 Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||||||||||||||| | || || ||||| Sbjct 288 GAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq12829 Length=36573 Score = 134 bits (148), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| ||||| || || |||| || | ||||| || ||||| || || | | Sbjct 35475 ATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATCAAACGC 35416 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || || |||||||||||||| ||||| | ||| ||||| ||| ||| Sbjct 35415 TGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTTCTATTGAA 35356 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||| | ||| || |||||||| || | ||||| | ||| || ||| Sbjct 35355 TCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAAAGATTTGC 35296 Query 192535 AT 192536 || Sbjct 35295 AT 35294 >seq9601 Length=294 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||||||||| || | || | ||||| ||| || || || Sbjct 42 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 101 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||| | | || || | ||| || || || ||||| ||||| ||||| || ||| Sbjct 102 CTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 161 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| || || || | || |||| || Sbjct 162 GGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCA 221 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||| || || | ||||| | || || ||||| Sbjct 222 ACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||||||||| || | || | ||||| ||| || || || Sbjct 30766 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 30707 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||| | | || || | ||| || || || ||||| ||||| ||||| || ||| Sbjct 30706 CTCAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 30647 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| || || || | || |||| || Sbjct 30646 GGGATCCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCA 30587 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||| || || | ||||| | || || ||||| Sbjct 30586 ACTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 116 bits (128), Expect = 7e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||||||||| || | || | ||||| ||| || || || Sbjct 29955 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 29896 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||| | | || || | |||||| || || ||||| ||||| ||||| || ||| Sbjct 29895 CTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 29836 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || || || || | || |||| || Sbjct 29835 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCG 29776 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTAT 192541 ||||| | ||| || ||||| || || | ||||| | || |||||||| ||||| Sbjct 29775 ACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTAT 29720 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||||||||| || | || | ||||| ||| || || || Sbjct 30183 ATACCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 30124 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||| | | || || | |||||| || || ||||| ||||| ||||| || ||| Sbjct 30123 CTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGT 30064 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || || || || | || |||| || Sbjct 30063 GGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCG 30004 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| || || | ||||| | || || ||||| Sbjct 30003 ACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984317422665150