Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7828 107 6e-18 seq5356 96.9 1e-14 seq6746 84.2 6e-11 >seq7828 Length=52483 Score = 107 bits (118), Expect = 6e-18 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA-----TTTTGTCTCGCAA 289084 |||||||| || ||||||||||| ||||| |||||||| | | ||||| | ||| Sbjct 7457 CCAACAGCGTCGATTTCGTCAATAAAAATTACACACGGTGCACGATTTTTTGCCGCGC-- 7400 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 || ||||| |||| || || || || | ||||| | ||||| ||||||| | Sbjct 7399 -TG--AATAAGTCTCGAACGCGACGGGCACCTTGCCCAACCAAAATTTCGTCAAATTCTG 7343 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | | | | || | || | ||| ||||| || ||||| || | || | | || Sbjct 7342 AGCCTGCTGCATGGAAAAAAGGAACACCCGCTTCTCCAGCTACCGCACGAGCTAATAATG 7283 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || |||||||| ||||| || |||||| | | || ||||||| || | ||| | Sbjct 7282 TTTTTCCTGTTCCTGGTGGCCCTACTAATAAAGCACCTTTTGGTAACTTGCCACCAAGCG 7223 Query 289265 ACTTATA--TTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 || | | |||| | ||| | || |||||||| || ||||| | | ||| | ||| || Sbjct 7222 -CTGAAAACTTTC-CTGGGTTTTTCAAAAATTCAACGATTTCTTTTAATTCCTGTTTCGC 7165 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATC 289364 ||||||| ||| || || ||||||| |||| ||| || Sbjct 7164 CTCATCAACACCTTTAACGTCGTCAAAAGTTATATCAATTTC 7123 >seq5356 Length=54635 Score = 96.9 bits (106), Expect = 1e-14 Identities = 176/252 (70%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||||| |||||| || || || || || | ||||| || || ||| Sbjct 5268 TCCATAGCTTTGATTAGACGACGTTGGATGTACCCGGTCTCGGCGGTTTTAACGGCCGTA 5327 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| |||||||||||||||| |||||||| | ||| || ||| ||||| Sbjct 5328 TCAATAAGACCTTCACGACCACCCATAGCGTGGAAGAAAAACTCCGAAGG-CGTGAGCCC 5386 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | | ||| | || ||||| || | | || || || |||| || ||| | Sbjct 5387 GGCTAAATACGAGTTTTCGACGAATCCTCTAGATTCCGGACCGTAATCATC---TTTGAT 5443 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||| || || | || || || | | ||| |||||||||| || || |||||||| || Sbjct 5444 AAAATGCGGTAACGTTCTTTTACGAAACCCGAATGGGATACGTTTACCTTCAACGTTTTG 5503 Query 302811 CTGTCCCAGGCA 302822 || || | ||| Sbjct 5504 TTGACCTACGCA 5515 >seq6746 Length=106662 Score = 84.2 bits (92), Expect = 6e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 155661 CTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGA 155720 || |||||||| || | ||| || ||||||||||| | ||||| ||||| || || || Sbjct 29928 CTTTTGATGGTACCAAGATTTTTTTGGTTAGATTTCATATTACAGGCATCTTTATACAGC 29869 Query 155721 ATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 || ||||| ||||||||||| ||||| | ||||| Sbjct 29868 ATATATGGAGTTCCTGTCTCTATCTGCGAGTCCA 29835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471574543581593