Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq11483 95.1 8e-15 seq12829 91.5 1e-13 seq9601 82.4 5e-11 seq9555 82.4 5e-11 >seq11483 Length=76730 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || ||||||||||||||||| | | | | |||| || | ||| ||||| ||||||||| Sbjct 51035 TTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATC 50976 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | || ||||| || | || | || ||||| || | || || |||||||| || || Sbjct 50975 AATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGAC--ATTCT 50918 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||| || | ||||| || | ||| || || || |||||||| || || || | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 34968 AGATCTGCAT 34977 | |||||||| Sbjct 50857 AAATCTGCAT 50848 >seq12829 Length=36573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || ||||| ||||| || |||| | ||| |||| || || || |||||||| || ||| Sbjct 35481 TTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAATC 35422 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | || || || ||| | || | ||| || || || | ||||| ||||| || | || Sbjct 35421 AAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTTCT 35362 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || || ||| | || || || | ||||| || || || ||||| || ||||||||| Sbjct 35361 ATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAAAG 35302 Query 34970 ATCTGCAT 34977 || ||||| Sbjct 35301 ATTTGCAT 35294 >seq9601 Length=294 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||||||||||||||||| || ||| ||||| | || | ||| || ||| Sbjct 117 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 176 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||||| ||||||| | | || | || | ||| || || | ||||| Sbjct 177 TCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 236 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || || || || || ||||| Sbjct 237 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||||||||||||||||| || ||| ||||| | || | ||| || ||| Sbjct 30691 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 30632 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||||| ||||||| | | || | || | ||| || || | ||||| Sbjct 30631 TCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 30572 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || || || || || ||||| Sbjct 30571 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325641638648291