Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5713 181 2e-40 seq4379 181 2e-40 seq12829 125 1e-23 seq11230 123 4e-23 seq9601 120 5e-22 seq9555 120 5e-22 seq11905 118 2e-21 seq11483 111 2e-19 >seq5713 Length=114977 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| ||||| | || || |||| | || Sbjct 41232 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCG 41291 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| |||||| ||| ||||||||| ||||| || ||||| | Sbjct 41292 ATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAGC 41351 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| |||| ||| ||||| | | |||||||||| Sbjct 41352 AACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATA 41411 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | ||||| ||| | ||||| |||||||||| Sbjct 41412 TTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTA 41459 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || || ||||| || || | || || |||| | || Sbjct 40776 TGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACCAAGCG 40835 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||||||| ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 40836 ATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAGC 40895 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || ||||||||||| || ||| ||||| | | ||||| |||| Sbjct 40896 AACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTACAATA 40955 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | ||||| ||| | ||||| |||||||||| Sbjct 40956 TCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTA 41003 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || || ||||| ||||| | || || |||| | || Sbjct 41004 TGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCG 41063 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| ||||| ||| |||||| || ||||| || ||||| | Sbjct 41064 ATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAGC 41123 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| |||| ||| ||||| | | |||||||||| Sbjct 41124 AACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATA 41183 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||||||| | ||||| ||| | ||||| |||||||||| Sbjct 41184 TCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGGTA 41231 Score = 147 bits (162), Expect = 3e-30 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| ||||| | || || |||| | || Sbjct 41460 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCG 41519 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| |||||| ||| ||| ||||| ||||| || ||||||| Sbjct 41520 ATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAAC 41579 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||||||||| || ||||| | | |||||||||| Sbjct 41580 AACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAATA 41639 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 41640 TCCAAAAAGAATCCAC 41655 >seq4379 Length=409 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| ||||| | || || |||| | || Sbjct 17 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCG 76 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| |||||| ||| ||||||||| ||||| || ||||| | Sbjct 77 ATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAGC 136 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| |||| ||| ||||| | | |||||||||| Sbjct 137 AACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATA 196 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | ||||| ||| | ||||| |||||||||| Sbjct 197 TTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTA 244 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| ||||| | || || |||| | || Sbjct 245 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCAAGCG 304 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||||||| ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 305 ATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAGC 364 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAAC 146194 || | ||||| || || ||||||||||| || ||| ||||| Sbjct 365 AACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAAC 407 >seq12829 Length=36573 Score = 125 bits (138), Expect = 1e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | || || |||||||| ||| | || || |||| | | Sbjct 35295 TGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCTG 35354 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | || ||||||| ||| | ||||| ||| ||||||||| ||||| || ||||||| Sbjct 35355 ATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAAC 35414 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || ||||| |||| ||| | || ||| |||||||||||| Sbjct 35415 AGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAATA 35474 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 35475 TTCAAAAAG 35483 >seq11230 Length=416 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | || Sbjct 86 TGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCG 145 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||| || ||| ||||||||||| |||||||| |||| Sbjct 146 ACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAAC 205 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || ||||| || || ||| |||||||| | || || |||| Sbjct 206 AAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAATA 265 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | ||||| || ||||| || | || |||| Sbjct 266 TTCAGAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGGTA 313 >seq9601 Length=294 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | || Sbjct 270 TGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCG 211 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || ||| |||||| ||| |||||||| || |||||||| |||| Sbjct 210 ACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAAC 151 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || || ||| | || || |||||||| | || || || | Sbjct 150 AAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACA 91 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || ||||||||||| Sbjct 90 TCCAAAAAGAATCCACCCTTCACTTAGTATTACG 57 >seq9555 Length=64705 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | || Sbjct 30538 TGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCG 30597 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || ||| |||||| ||| |||||||| || |||||||| |||| Sbjct 30598 ACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAAC 30657 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || || ||| | || || |||||||| | || || || | Sbjct 30658 AAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACA 30717 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || ||||||||||| Sbjct 30718 TCCAAAAAGAATCCACCCTTCACTTAGTATTACG 30751 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | | Sbjct 29955 TGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGG 30014 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||| || ||| |||||||| || |||||||| |||| Sbjct 30015 ACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 30074 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||| | || || |||||||| | || || || | Sbjct 30075 AAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACA 30134 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || ||||||||||| Sbjct 30135 TCCAAAAAGAATCCACCCTTCACTTAGTATTACG 30168 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | || Sbjct 30766 TGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCG 30825 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||| || ||| ||||||||||| |||||||| |||| Sbjct 30826 ACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAAC 30885 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || ||||| || || ||| |||||||| | || || || | Sbjct 30886 AAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAACA 30945 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | || || ||||| || Sbjct 30946 TCCAAAAGGAATCCACCCTTCACTTGGTATTGCG 30979 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || |||||||| || ||| | || || || | | Sbjct 29727 TGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGG 29786 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||| || ||| |||||||| || |||||||| |||| Sbjct 29787 ACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 29846 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||| | || || |||||||| | || || || | Sbjct 29847 AAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACA 29906 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || ||||||||||| Sbjct 29907 TCCAAAAAGAATCCACCCTTCACTTAGTATTACG 29940 >seq11905 Length=336 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| || ||| | || || || | || Sbjct 312 TGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCG 253 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || ||| |||||| ||| |||||||| || |||||||| |||| Sbjct 252 ACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAAC 193 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || || ||| | || || |||||||| | || || || | Sbjct 192 AAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACA 133 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||||| || ||||| || | || |||| Sbjct 132 TCCAAAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGGTA 85 >seq11483 Length=76730 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||| | || || ||||||||||| | || || |||| | || Sbjct 50849 TGCAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCCG 50908 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| ||| | || || || ||| ||||| |||||||| ||||| | Sbjct 50909 ACTCGATTGAGAATGTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAGC 50968 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || || ||||||||||| ||| ||||| || | || ||||| | Sbjct 50969 AGAGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAACCTTGTCGGACTATAACA 51028 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 51029 TTCAAAAAG 51037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786039738765880