Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5713 138 9e-28 seq4379 138 9e-28 seq11905 132 4e-26 seq11483 131 1e-25 seq9555 116 3e-21 seq9601 114 1e-20 seq11230 105 5e-18 >seq5713 Length=114977 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| || || |||||||| | || ||||| ||||| || |||||||| | Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||||||||| || | || | | ||||||||| || ||| Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| |||||| | ||| || |||| | || || |||| || Sbjct 41109 ATTCCCTCTTTATCTTG-AATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGAC 41051 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| ||||| || |||||||| || |||||||| Sbjct 41050 TTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| || || |||||||| | || |||||||||||||| |||||||| | Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||||||||| || | || | | ||||||||| || ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| |||||| | ||| ||| | || | || || |||| || Sbjct 41337 ATTCCTTCTTTATCTTG-AATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 41279 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| |||||||| ||||| || || || ||||| Sbjct 41278 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| || || |||||||| | || ||||||||||| || || ||||| | | Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | |||||| ||||| | || | | ||||||||| || ||| Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | ||| ||| | || | || || |||| || Sbjct 40881 ATTCCTTCCTTATCTTG-AATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGAC 40823 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || || ||||| ||||| || ||||| || || ||||||||||| Sbjct 40822 TTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||| || || |||||||||||||| || |||||||| | | || | || Sbjct 41671 CAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTC 41612 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||| ||||| | || | | ||| ||||| || ||||| || || || || Sbjct 41611 TTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATC 41552 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | ||| || | || | || || |||| ||||| || || |||| Sbjct 41551 TTG-AATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAG 41493 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| ||||| || || || ||||| Sbjct 41492 TTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| || || |||||||| | || |||||||||||||| |||||||| | Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||||||||| || | || | | ||||||||| || ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| |||||| | ||| ||| | || | || || |||| || Sbjct 122 ATTCCTTCTTTATCTTG-AATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGAC 64 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| |||||||| ||||| || || || ||||| Sbjct 63 TTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq11905 Length=336 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| | |||||||||||| |||||||||||||| ||||| || || | ||| | | | Sbjct 98 ACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT-CTTC 156 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || |||||||| || || || | ||||||||||| || || || || ||||| |||| Sbjct 157 CGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTT 216 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||| |||||| |||| | ||||| || | || ||||| | ||||| Sbjct 217 TGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTA 276 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | ||||| || || || ||||| Sbjct 277 TCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq11483 Length=76730 Score = 131 bits (144), Expect = 1e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||||||||||||||| |||| | ||| | ||| || | |||||| ||||| | | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||||||| ||||||||||| |||||||| || || || || | || ||||||||| | | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | | ||| ||| |||| ||||| || || || ||||| || || | ||||| || | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 29777 ATATCTGCAT 29786 | |||||||| Sbjct 50857 AAATCTGCAT 50848 >seq9555 Length=64705 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 || || ||||| |||||||||||||| ||||| || || | ||| | | | || || Sbjct 29934 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT-CTTCCGTCTTC 29876 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||||||| || || | ||||||||||| || || || || ||||| ||||||||||| Sbjct 29875 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 29816 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || ||||| |||| | ||||| || | || ||||| | ||| || ||||| Sbjct 29815 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29756 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | ||||| || || |||||||| || Sbjct 29755 TCCCGTAAGAGTTTTCACGAAGATCTGCATGTT 29723 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 || || ||||| |||||||||||||| ||||| || || | ||| | | | || || Sbjct 30745 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT-CTTCCGTCTTC 30687 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 |||||| || || || | ||||||||||| || || || || || || ||||||||||| Sbjct 30686 GAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTG 30627 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | ||| |||||| |||| | ||||| || | || ||||| | |||||| ||||| Sbjct 30626 GATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTT 30567 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| || || || ||||| Sbjct 30566 TCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 || || ||||| |||||||||||||| ||||| || || | ||| | | | || || Sbjct 30162 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT-CTTCCGTCTTC 30104 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||||||| || || | ||||||||||| || || || || ||||| ||||||||||| Sbjct 30103 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTG 30044 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || ||||| |||| | ||||| || | || ||||| | ||| || ||||| Sbjct 30043 GATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTT 29984 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| || || || ||||| Sbjct 29983 TCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| ||||| ||||| |||||||| ||||| ||||| || || | ||| | | | Sbjct 30980 ACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCC 30921 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 | || || | ||||| || || | ||||||||||| || || || || || || |||| Sbjct 30920 A-TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTT 30862 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || ||||| |||| | ||||| || | || ||||| | ||| | Sbjct 30861 TGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGA 30802 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | ||||| || || || ||||| Sbjct 30801 TCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq9601 Length=294 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 || || ||||| |||||||||||||| ||||| || || | ||| | | | || || Sbjct 63 ACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT-CTTCCGTCTTC 121 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 |||||| || || || | ||||||||||| || || || || || || ||||||||||| Sbjct 122 GAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTG 181 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | ||| |||||| |||| | ||||| || | || ||||| | |||||| ||||| Sbjct 182 GATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTT 241 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| || || || ||||| Sbjct 242 TCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq11230 Length=416 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| | |||||||||||| ||||||||||| ||||| || || || | ||| | | | Sbjct 300 ACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCC 241 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 | || || | ||||| || || | ||||||||||| || || || || || || |||| Sbjct 240 A-TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTT 182 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | || ||||| |||| | ||||| || | || ||||| | ||| | Sbjct 181 TGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGA 122 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | ||||| || || || ||||| Sbjct 121 TCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385158687962349