Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq625 95.1 2e-14 seq5713 91.5 3e-13 seq11786 84.2 4e-11 >seq625 Length=71657 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 182990 AACAACTCGAA-AAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATG 183048 |||| |||||| || ||| |||| |||||| |||||||||| | |||| || ||| Sbjct 54278 AACAGCTCGAAGAAAGCA-AAACTCATGACTTATTATGGAATGCTGCCCAAAAGCAAATG 54220 Query 183049 ATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAA 183108 || ||||| ||||||||| | |||||||||||||| ||||| || || ||| | ||| Sbjct 54219 GTGCTTGAAGGCAAAATGCATGGATTTTTACGAATGTATTGGGCAAAGAAAATATTAGAA 54160 Query 183109 TGGACAAGAACTCCGGAAGATGCTTT 183134 ||||| || ||| ||| | || || Sbjct 54159 TGGACCCAAAGTCCAGAACAAGCGTT 54134 >seq5713 Length=114977 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696 ||| || |||| || || |||||||||||||| |||||||| | ||||||||| Sbjct 41659 CAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTCTTCTAATTGTTT 41600 Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | ||||| || | ||||||| |||| | ||| |||||||||||||||| || || Sbjct 41599 ACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGAATTTTAGC 41540 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||| | || || || |||| Sbjct 41539 TTTCACGTTCTCGATGGTAT 41520 >seq11786 Length=81810 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 142964 TACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGA 143023 || |||| |||||||||||||| ||||| | ||| |||||| || ||||||| || Sbjct 38345 TAAAGATGAAGATGAGTGGACTGCTTGGCAGAAACGCGGCGATCCTGTGCTGCATATTGA 38286 Query 143024 ACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAA 143083 |||| | | |||||| ||| || |||| || || || || ||||| | ||||| || Sbjct 38285 ACTTGGAAAATGGGCTGATCTTCTTCTAATCGCTCCGTTGGACGCAAACTCATTAGCTAA 38226 Query 143084 AATAGC 143089 |||||| Sbjct 38225 AATAGC 38220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903265649163040