Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4268 100 4e-16 seq945 100 4e-16 seq7989 98.7 1e-15 seq449 98.7 1e-15 >seq4268 Length=52723 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 ||||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 23063 TATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 23122 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 23123 TTCCCCGCCGGGGAG 23137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 23066 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 23125 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 23126 CCCGCCGGGGAGG 23138 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 23137 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 23078 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 23077 TACTACCGAGGA 23066 >seq945 Length=45805 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 ||||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 9658 TATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 9599 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 9598 TTCCCCGCCGGGGAG 9584 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 9655 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9596 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 9595 CCCGCCGGGGAGG 9583 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 9584 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9643 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 9644 TACTACCGAGGA 9655 >seq7989 Length=79767 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 79534 ATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 79475 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 79474 TCCCCGCCGGGGAG 79461 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 79532 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 79473 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 79472 CCCGCCGGGGAGG 79460 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 79461 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 79520 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 79521 TACTACCGAGGAATT 79535 >seq449 Length=135954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 135723 ATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 135782 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 135783 TCCCCGCCGGGGAG 135796 Score = 93.3 bits (102), Expect = 6e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 135722 CATTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 135781 Query 11786 TTCCCCGACGAGGAGG 11801 ||||||| || ||||| Sbjct 135782 TTCCCCGCCGGGGAGG 135797 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 135796 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 135737 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 135736 TACTACCGAGGA 135725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652739618542160