Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11230 111 2e-19 seq9555 93.3 4e-14 seq5713 87.8 2e-12 seq11483 84.2 2e-11 seq6746 82.4 7e-11 >seq11230 Length=416 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||| |||||||| |||||||| || | || ||| || || | | Sbjct 290 AAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAAC 231 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | | || |||||||| ||||||||||| ||||| |||| Sbjct 230 TGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATC 171 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| ||||| || || | |||| ||||| ||| Sbjct 170 TTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCG 111 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| ||||| Sbjct 110 GTGAGCGTTTTCACGAAAATTTGCAT 85 >seq9555 Length=64705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || || || || ||||| || | || ||| || || | | Sbjct 30970 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCATCTTCCAAC 30911 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | | || |||||||| ||||||||||| ||||| |||| Sbjct 30910 TGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATC 30851 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| ||||| || || | |||| ||||| ||| Sbjct 30850 TTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCG 30791 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| ||||| Sbjct 30790 GTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq5713 Length=114977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || ||||| || |||||||||||| | || || || | Sbjct 40980 AAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAAT 40921 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | ||||| || ||||| || || || || |||||||| || ||| Sbjct 40920 TGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATC-TTGAAT 40862 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | ||| | || ||| | || || || |||| |||| |||||| || Sbjct 40861 TTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACC 40802 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| ||||| |||||||| Sbjct 40801 AGTCAAAGTTTTGACGAAGATCTGCAT 40775 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || || || || ||||| |||||| | || || || || Sbjct 41208 AAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGT 41149 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| | ||||| || ||||| || || || || || || || || ||| Sbjct 41148 TGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCT-TGAAT 41090 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | |||| || ||| |||| || || |||| || | ||||| || Sbjct 41089 TTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACC 41030 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||||||||| Sbjct 41029 AGTCAAAGTTTTAACGAAAATCTGCAT 41003 >seq11483 Length=76730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | | |||||| || || || || |||||||| || ||| Sbjct 50993 TGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATC 50934 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| || ||||| || || || |||| ||| | ||||| || Sbjct 50933 TTCTGTTTGACATTCTCAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCC 50874 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 50873 GTGAGTGTTTTCACGAAAATCTGCAT 50848 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || || |||||| || |||| ||||| || || | || || || Sbjct 30772 ACCTGGAATTCTCCACTGAGCACTCGTCGCACATACATATTTGAAGTGTATGGCTCGAAT 30713 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 || ||||| || |||||||| || || | || || ||||| || | |||| | Sbjct 30712 CCTTCATTGTTTCCTAAAATCTGGGCAGTGGAAGCTGTCGGCATTGGAGCCAATAGCAAC 30653 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 || || || | |||| | ||||| ||||| |||| ||||| ||| | ||| | || Sbjct 30652 GAATTTCGTACACCGTGTTTTTTGATTTTTTCTTTCAAAGCCGACCAATTCCATAACGAA 30593 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 | ||| |||||||||||||| || || || | ||| Sbjct 30592 GTCGGGGTCACGTTCCACATATCATATTGTAAAAT 30558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483342914866360