Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6746 107 5e-18 seq607 91.5 3e-13 >seq6746 Length=106662 Score = 107 bits (118), Expect = 5e-18 Identities = 198/290 (68%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 |||| || | |||| ||| |||||||| ||| | ||||| ||| ||||||| | || Sbjct 29383 CGAATGGCGTATCAAATGGTCTTGTTCCTATGCTTCAAGTCTACAATTACACTGCGAGAT 29442 Query 110725 ATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | || ||||||| || || | || ||| | || || |||||| | ||||| |||| Sbjct 29443 ACGTCGATCAAGGAGGCAACAAAAGACCAGGCGCTTTCGCCATCTATTTAGAACCCTGGC 29502 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 || | ||||| || || || |||||| | || | ||| || ||||| | ||| Sbjct 29503 ATACGGATATTTTCGAGTTTTTAGAATTACGGATGAATTCCGGTAACGAAGAGTATAGAT 29562 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | ||||||||| || | |||||| | || |||||||| ||||||| || | Sbjct 29563 GTAGAGATTTATTTATCGCTCTATGGATTCCTGACGAATTCATGAGACGTGTTGAAAGTA 29622 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 | | |||| |||||||||||| || | |||||| |||||||| Sbjct 29623 ACCAAACGTGGAGTCTTATGTGTCCAAATGACTGCCCTGGTTTATCTGAT 29672 >seq607 Length=75634 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 ||||||| ||||| ||| | || || || | | ||| | | | |||||||||||| Sbjct 47325 AATATTTGGAAAGAACACATTAACGTTTCATCTACTGACATCATAGCTCCAGCATTATCG 47384 Query 167262 AATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| ||| |||||| || |||||||||| ||| |||| || || ||| |||| || Sbjct 47385 AATTC-GCCGCAATAATTCGGAGCTGAAAATAAAGTTACTAGTTGCCGTTTGGAAAAAAA 47443 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCAACTCCTAtttttt 167379 ||| || || ||||| || |||| ||| || | | || ||| | || || | ||||| Sbjct 47444 TTCGTATCCGTCTTCTACTACTTGATGAGCTCGGCATATCAAATCGAAATCATTTTTTTG 47503 Query 167380 tAAGAAAATTA 167390 ||| ||| ||| Sbjct 47504 TAA-AAATTTA 47513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186616809363329