Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5713 149 4e-31 seq4379 147 1e-30 seq12829 116 2e-21 seq11905 93.3 3e-14 seq11483 89.7 3e-13 seq8209 87.8 1e-12 >seq5713 Length=114977 Score = 149 bits (164), Expect = 4e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | |||||||||| ||| |||||||| || ||||||||||| Sbjct 41002 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGA 40943 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || ||||||||||| || || || || | ||| ||||||||| | || Sbjct 40942 AAGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGG 40883 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| | || |||| || | ||| ||||||| ||| | Sbjct 40882 AATTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTCTCGATGGTATCGCTTGGTTCGA 40824 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| |||||||| || || ||||| || ||||||||||| Sbjct 40823 CTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 40775 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | |||||||||| ||| |||||||| || || |||||||| Sbjct 41458 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 41399 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| ||||| || || | ||| ||||||||| | || Sbjct 41398 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41339 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| |||| |||| || | ||| ||||| | ||| | Sbjct 41338 AATTCCTTCTTTATCTTGAATTTTAGCTTTC-ACATTCTCGATGGTATCGCTGGGTTCGA 41280 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||| || |||||||| ||||| ||||| || ||||| |||||| Sbjct 41279 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 41230 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | |||||||||| ||| || ||||| || || |||||||| Sbjct 41230 ACCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGA 41171 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| ||||| || || | ||| ||||||||| | || Sbjct 41170 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 41111 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || |||||| | || ||| | || | ||| ||||| | ||| | Sbjct 41110 AATTCCCTCTTTATCTTGAATTTT-GGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGA 41052 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||| || |||||||| || || ||||| || || ||||||||| Sbjct 41051 CTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCATA 41002 >seq4379 Length=409 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | |||||||||| ||| |||||||| || || |||||||| Sbjct 243 ACCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGA 184 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| ||||| || || | ||| ||||||||| | || Sbjct 183 GAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 124 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| |||| |||| || | ||| ||||| | ||| | Sbjct 123 AATTCCTTCTTTATCTTGAATTTTAGCTTTC-ACATTCTCGATGGTATCGCTGGGTTCGA 65 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||| || |||||||| ||||| ||||| || ||||| |||||| Sbjct 64 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 15 Score = 98.7 bits (108), Expect = 7e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 33584 GTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCA 33643 |||| | | | || ||||||||||| || || || || | ||| ||||||||| | || | Sbjct 409 GTGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAA 350 Query 33644 CACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACG 33702 ||||| || || |||||| | || |||| || | ||| ||||||| ||| || Sbjct 349 TTCCTTCCTTATCTTGAATTTT-GGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACT 291 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||| || |||||||| ||||| ||||| || ||||| |||||| Sbjct 290 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 243 >seq12829 Length=36573 Score = 116 bits (128), Expect = 2e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || || ||||| || | || || | || || | |||||||||||||||| Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||||||||| |||||| | || | |||||||| || ||||||||||||| |||| Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTC-ACATTT 35365 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | | || | ||| || || | || || |||||||| || | |||||||||| Sbjct 35364 TCTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACA 35305 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 35304 AAGATTTGCAT 35294 >seq11905 Length=336 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||||||||||||| || ||| |||||||| |||||||| ||| Sbjct 86 ACCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCT 145 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || | ||| |||||||| || ||||| | || || || | || Sbjct 146 CAACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 205 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || || | || | |||||| | || | Sbjct 206 GATACCTTCTTTGTCTTGGATTTT-AGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAA 264 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || |||||||| || || | ||||| || || || |||||| Sbjct 265 CTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCATA 314 >seq11483 Length=76730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| ||||| || || || | || | | | || || ||||||||||| || || | Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| | ||||||||| | || | |||||| || || ||| |||||||| |||| Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTT-GACATTC 50919 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | | |||| | ||| || || | || || |||||||| || | ||||| || Sbjct 50918 TCAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACG 50859 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 50858 AAAATCTGCAT 50848 >seq8209 Length=47891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| ||||| |||||||| | ||| |||||||| || ||||| || || Sbjct 19112 CCTCCTCTCAATCGTAAGACCAAATGCAAAGTTGATTCTTTTTGGATATTGTAGTCAGAA 19053 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || || ||| | || || | ||||| || || ||||||||||||||||| || Sbjct 19052 AGGGTACGTCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTC 19000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328652365634880