Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9555 159 8e-34 seq11230 150 4e-31 seq9601 141 2e-28 seq11905 136 9e-27 seq5713 95.1 3e-14 seq12829 93.3 1e-13 seq11483 91.5 3e-13 >seq9555 Length=64705 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 30780 AAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCGACACAATCGAAAAC 30839 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| |||||| | |||||| Sbjct 30840 GTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAACAAAGATTGATCTTC 30899 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| |||||||||||||| || || ||| || |||||| |||| || || || Sbjct 30900 GCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAACATCCAAAAGGAATCC 30959 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | ||||| Sbjct 30960 ACCCTTCACTTGGTATTGCGTCTTCG 30985 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||||||||| ||||| ||||| || || |||||| ||||| Sbjct 30552 AAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGACACAATCGAAAAC 30611 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| |||||| | ||||| Sbjct 30612 GTCAAAGCTAAA-ATCCAAGACAAAGAAGGGATCCCACCCGACCAACAAAGATTGATCTT 30670 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | ||||| ||||| || ||| ||| |||||| |||| ||||| || Sbjct 30671 CGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATC 30730 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || | ||||| Sbjct 30731 CACCCTTCACTTAGTATTACGTCTTCG 30757 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||||||||||||||||||||| || || ||||| ||||| Sbjct 29741 AAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGGACACGATCGAAAAC 29800 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| |||||| | |||||| Sbjct 29801 GTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGATTGATCTTC 29860 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || | ||||| ||||| || ||| ||| |||||| |||| ||||| || Sbjct 29861 GCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATCC 29920 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || | ||||| Sbjct 29921 ACCCTTCACTTAGTATTACGTCTTCG 29946 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||||||||||||||||||||| || || ||||| ||||| Sbjct 29969 AAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGGACACGATCGAAAAC 30028 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| |||||| | |||||| Sbjct 30029 GTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGATTGATCTTC 30088 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || | ||||| ||||| || ||| ||| |||||| |||| ||||| || Sbjct 30089 GCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATCC 30148 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || | ||||| Sbjct 30149 ACCCTTCACTTAGTATTACGTCTTCG 30174 >seq11230 Length=416 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 100 AAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCGACACAATCGAAAAC 159 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| |||||| | |||||| Sbjct 160 GTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAACAAAGATTGATCTTC 219 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| |||||||||||||| || || ||| || ||||| | |||||||| || Sbjct 220 GCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAATATTCAGAAAGAATCC 279 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 280 ACCCTTCA 287 >seq9601 Length=294 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||||||||| ||||| ||||| || || |||||| ||||| Sbjct 256 AAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGACACAATCGAAAAC 197 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| |||||| | ||||| Sbjct 196 GTCAAAGCTAAA-ATCCAAGACAAAGAAGGGATCCCACCCGACCAACAAAGATTGATCTT 138 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | ||||| ||||| || ||| ||| |||||| |||| ||||| || Sbjct 137 CGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATC 78 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || | ||||| Sbjct 77 CACCCTTCACTTAGTATTACGTCTTCG 51 >seq11905 Length=336 Score = 136 bits (150), Expect = 9e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||||||||| ||||| ||||| || || |||||| ||||| Sbjct 298 AAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGACACAATCGAAAAC 239 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| |||||| | ||||| Sbjct 238 GTCAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGATTGATCTT 180 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | ||||| ||||| || ||| ||| |||||| |||| ||||| || Sbjct 179 CGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATC 120 Query 206364 TACTCTTCA 206372 || ||||| Sbjct 119 CACCCTTCA 111 >seq5713 Length=114977 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || |||||| | || || ||||| ||||| | ||||| ||| Sbjct 40772 AAAATG---CAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAA 40828 Query 206224 AGTTCTGACACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || |||| ||||| || ||| |||||||| || ||||||||| || Sbjct 40829 CCAAGCGATACCATCGAGAATGTAAAAGCCAAA-ATTCAAGATAAGGAAGGAATTCCCCC 40887 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | || |||||||| || || || |||||||||||||| ||| | |||| Sbjct 40888 AGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGA 40947 Query 206343 TTACAACGTCCAGAAAGAGTCTACT 206367 |||||| |||| ||||| || ||| Sbjct 40948 TTACAATATCCAAAAAGAATCGACT 40972 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| || ||||||||| || || ||| | || |||||||| Sbjct 41537 AAAGCTAAA-ATTCAAGATAAGGAAGGAATTCCCCCAGATCAACAACGTCTCATCTTCGC 41595 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || || || || ||||| ||||| ||| | | ||||| || |||| ||||| || || Sbjct 41596 TGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAATATCCAAAAAGAATCCAC 41655 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 || ||| | || ||||||||||| Sbjct 41656 ACTGCACTTGGTGTTGAGACTTCG 41679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | ||| || || || ||||| |||| |||||| |||| | ||| Sbjct 41679 CGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTT 41620 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||| | || || || |||||||| || ||||||||| Sbjct 41619 CTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGA 41575 >seq12829 Length=36573 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| || ||||| || ||||||||||| ||| |||||| || | ||| Sbjct 35309 AAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCTGATTCAATAGAAAAT 35368 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || || || || |||||||| |||||||| ||| || || |||| || || || Sbjct 35369 GTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGA---TCAACAGCGTTTGATT 35425 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || |||||||| ||| | || ||||| | ||||| | ||||| || | || |||| Sbjct 35426 TTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAATATTCAAAAAG 35483 >seq11483 Length=76730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | ||||| ||| ||| ||| | | || Sbjct 50863 AAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCCGACTCGATTGAGAAT 50922 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || || |||||||| || || ||||| ||| ||||| || ||| | |||||| Sbjct 50923 GTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAGCAGAGATTGATCTTC 50982 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || ||||| || || ||||||||||| || ||| | || || ||| | || |||| Sbjct 50983 GCTGGAAAACAATTAGAAGATGGAAGAACCTTGTCGGACTATAACATTCAAAAAG 51037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181625633743769