Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5713 120 3e-22 seq12829 118 1e-21 seq4379 116 4e-21 seq11905 113 4e-20 seq9601 104 2e-17 seq9555 104 2e-17 seq11230 100 3e-16 seq11483 86.0 6e-12 >seq5713 Length=114977 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || || ||||| || || || ||| | || | |||||| Sbjct 41211 ACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCT 41152 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| |||| ||||| || |||||||| || || || |||||||| | Sbjct 41151 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGA 41092 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||||| | || || ||||||| ||| | |||||| Sbjct 41091 ATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTA 41032 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | |||||||||||| Sbjct 41031 CCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || |||||||| || ||||| ||| | || | |||||| Sbjct 40983 ACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCC 40924 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||| | |||| ||||| || |||||||| || || ||||| ||||| | Sbjct 40923 AATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGA 40864 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | |||||| | || || ||||||| ||| | |||||| Sbjct 40863 ATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTA 40804 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | ||| |||||||| Sbjct 40803 CCAGTCAAAGTTTTGACGAAGATCTGCAT 40775 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || ||||||||||| || || ||| | || | |||||| Sbjct 41439 ACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCT 41380 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| |||| ||||| || |||||||| || || ||||||||||| | Sbjct 41379 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGA 41320 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | |||||| | || || ||||||| ||| | |||||| Sbjct 41319 ATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTA 41260 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||| | ||| || ||||| Sbjct 41259 CCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | |||| ||||| ||||||||||| || || ||||| ||| Sbjct 41613 TCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTA 41554 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | || | |||||| | || || ||||||| ||| | Sbjct 41553 TCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATA 41494 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||||| | ||| || ||||| Sbjct 41493 GTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq12829 Length=36573 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || || || | |||||| ||| || |||||||| |||| | | | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | |||||||||||||||||| || ||||||||||| |||||| ||||||| | || Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | | ||| | || || ||||| | || | |||||||| || || ||||||| | Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 132114 AAATCTGCAT 132123 | || ||||| Sbjct 35303 AGATTTGCAT 35294 >seq4379 Length=409 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || ||||||||||| || || ||| | || | |||||| Sbjct 224 ACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCT 165 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| |||| ||||| || |||||||| || || ||||||||||| | Sbjct 164 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGA 105 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | |||||| | || || ||||||| ||| | |||||| Sbjct 104 ATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTA 45 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||| | ||| || ||||| Sbjct 44 CCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | |||||||| | |||| ||||| || |||||||| || || ||||| || Sbjct 399 ATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTT 340 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| |||||| ||| | | || | |||||| | || || ||||||| ||| | Sbjct 339 ATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTAAT 280 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||||| | ||| || ||||| Sbjct 279 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq11905 Length=336 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | | || |||||||| |||||||||||||||| || | Sbjct 99 CGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 158 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| |||| | | ||||| || || || || |||||||| Sbjct 159 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 218 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || |||| |||||| ||||| | || | | Sbjct 219 TCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 278 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||||||| | |||||| ||||| Sbjct 279 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| |||||||||||||||| || | Sbjct 57 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 116 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| |||| | | ||||| || || || || |||||||| Sbjct 117 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 176 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || |||| |||||| ||||| | || | | Sbjct 177 TCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 236 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||||||| | |||||| ||||| Sbjct 237 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| |||||||||||||||| || | Sbjct 30751 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 30692 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| |||| | | ||||| || || || || |||||||| Sbjct 30691 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTG 30632 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || |||| |||||| ||||| | || | | Sbjct 30631 TCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 30572 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||||||| | |||||| ||||| Sbjct 30571 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || || ||||| ||||||||||| |||| || | | Sbjct 30979 CGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCA 30920 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| |||| |||| | | ||||| || || || ||||||||||| Sbjct 30919 TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTG 30860 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || |||| |||||| ||||| | || | | Sbjct 30859 TCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATC 30800 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||| | |||||| ||||| Sbjct 30799 GTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| |||||||||||||||| || | Sbjct 29940 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 29881 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| |||| |||| | | ||||| || || || || |||||||| Sbjct 29880 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 29821 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | |||||| ||||| | || | | Sbjct 29820 TCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATC 29761 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || |||||||| | ||| ||||||||| Sbjct 29760 GTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATG 29725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| |||||||||||||||| || | Sbjct 30168 CGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCG 30109 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| ||||| |||| |||| | | ||||| || || || || |||||||| Sbjct 30108 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTG 30049 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | |||||| ||||| | || | | Sbjct 30048 TCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATC 29989 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||||||| | |||||| ||||| Sbjct 29988 GTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq11230 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | | || ||||| ||||| |||||||| |||| || | | Sbjct 299 CGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCA 240 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| |||| |||| | | ||||| || || || ||||||||||| Sbjct 239 TCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTG 180 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || |||| |||||| ||||| | || | | Sbjct 179 TCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATC 120 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||| | |||||| ||||| Sbjct 119 GTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq11483 Length=76730 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||||||||| ||||| || ||| | |||||| | ||||| || | ||| Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | | ||| ||||| || || || ||||| ||||| ||| || ||||| | | | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | | |||| || || ||||||| || | |||||||| || || ||||| | || Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 132114 AAATCTGCAT 132123 |||||||||| Sbjct 50857 AAATCTGCAT 50848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476534411978040