Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5713 188 6e-43 seq4379 188 6e-43 seq11905 132 4e-26 seq9555 127 2e-24 seq11230 123 2e-23 seq9601 123 2e-23 seq11483 89.7 5e-13 seq12829 82.4 7e-11 seq6746 82.4 7e-11 >seq5713 Length=114977 Score = 188 bits (208), Expect = 6e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| || ||| | || ||| ||||||||||| ||| | Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| |||||| |||||||| || || || || |||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || |||||||||||| ||||||| |||| | || |||||| ||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || | ||||| || | ||||||||||||| Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41457 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || || ||| | || ||| ||||||||||| ||| | Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| ||||||||||| || || || |||||| Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || |||||||||||| ||||||| |||| | || |||||| ||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41182 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| || | ||||| || | ||||||||||||| Sbjct 41183 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGG 41229 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || ||||| || || || ||| | |||||| ||||||||||| | Sbjct 40772 AAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACCA 40831 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||||| |||||| | |||||| |||||| ||||| || || || || || ||| Sbjct 40832 AGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGAT 40891 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 |||||| | ||||| | || || |||||| | ||||||| |||| | | ||||||| Sbjct 40892 CAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTAC 40951 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| || | ||||| || | ||||||||||||| Sbjct 40952 AATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| || ||| | || ||| ||||||||||| ||| | Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| |||||| ||||| || || || || || ||||| Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAA 41578 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || || |||||| | ||||| | |||| | || ||||| ||| Sbjct 41579 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAAT 41638 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || |||||||||||||| | || || ||||| ||| Sbjct 41639 ATCCAAAAAGAATCCACACTGCACTTGGTGTTGAGA 41674 >seq4379 Length=409 Score = 188 bits (208), Expect = 6e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| || ||| | || ||| ||||||||||| ||| | Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| |||||| |||||||| || || || || |||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || |||||||||||| ||||||| |||| | || |||||| ||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || | ||||| || | ||||||||||||| Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 242 Score = 118 bits (130), Expect = 9e-22 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| || ||| | || ||| ||||||||||| | | | Sbjct 244 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCAAGC 303 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | |||||| |||||| ||||| || || || || || |||||| Sbjct 304 GATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 363 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 25337 ||| | ||||| | || || |||||| | ||||||| |||| Sbjct 364 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAA 406 >seq11905 Length=336 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||||||| |||| || | ||||| || | | Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| ||||| || ||||| || Sbjct 253 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAA 194 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| || ||||||||||| | |||| | ||||| ||||| Sbjct 193 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 134 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || ||||||||||||||| ||||||| |||||| Sbjct 133 ATCCAAAAAGAATCCACCCTTCATTTGGTGTTA 101 >seq9555 Length=64705 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | || || ||||| | || |||||| ||||||| | |||||||| ||| Sbjct 29723 AACATGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGA-GCC 29781 Query 25232 AACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || | || ||||| | || || || || || ||||| ||||| || ||||| Sbjct 29782 GTCGGACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGA 29841 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | || ||| |||||||||||||| | |||| | ||||| || Sbjct 29842 CCAACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTA 29901 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||| || ||||||||||||||| |||| ||||| ||| Sbjct 29902 CAACATCCAAAAAGAATCCACCCTTCACTTAGTATTA 29938 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || |||||| ||||||| | |||||||| ||| | Sbjct 29954 ATGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGA-GCCGTC 30012 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || ||||| | || || || || || ||||| ||||| || ||||| || Sbjct 30013 GGACACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCA 30072 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | || ||| |||||||||||||| | |||| | ||||| ||||| Sbjct 30073 ACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 30132 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || ||||||||||||||| |||| ||||| ||| Sbjct 30133 CATCCAAAAAGAATCCACCCTTCACTTAGTATTA 30166 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||||||| |||| || | ||||| || | | Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| || || || ||||| || Sbjct 30597 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 30656 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| || ||||||||||| | |||| | ||||| ||||| Sbjct 30657 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 30716 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || ||||||||||||||| |||| ||||| ||| Sbjct 30717 ATCCAAAAAGAATCCACCCTTCACTTAGTATTA 30749 >seq11230 Length=416 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||||||| ||||||| | |||||||| | | Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || ||||| || || || ||||| || Sbjct 145 GACACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAA 204 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| ||||| | ||||||| |||| | || || |||||| Sbjct 205 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAAT 264 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||| |||||||||||| ||||||| |||||| Sbjct 265 ATTCAGAAAGAATCCACCCTTCATTTGGTGTTA 297 >seq9601 Length=294 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||||||| |||| || | ||||| || | | Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| || || || ||||| || Sbjct 211 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 152 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| || ||||||||||| | |||| | ||||| ||||| Sbjct 151 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 92 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || ||||||||||||||| |||| ||||| ||| Sbjct 91 ATCCAAAAAGAATCCACCCTTCACTTAGTATTA 59 >seq11483 Length=76730 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || |||||| | || || ||| | || || ||||||||||| | | Sbjct 50848 ATGCAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCC 50907 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || ||| | || ||||| || ||| ||||| || ||||| || || |||||| Sbjct 50908 GACTCGATTGAGAATGTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 50967 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||| | || | || || |||||| | ||||||| |||| |||| || || | Sbjct 50968 CAGAGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAACCTTGTC--GGACTATA 51025 Query 25353 ATATTCAAAAAG 25364 | |||||||||| Sbjct 51026 ACATTCAAAAAG 51037 >seq12829 Length=36573 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | ||||| ||| | || || | ||||| ||| | Sbjct 35294 ATGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCT 35353 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| | || || | || ||||| |||||| |||||||| || || || || ||||| Sbjct 35354 GATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAA 35413 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | ||| ||||| || || |||| | | | | ||||| ||| Sbjct 35414 CAGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAAT 35473 Query 25355 ATTCAAAAAG 25364 |||||||||| Sbjct 35474 ATTCAAAAAG 35483 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 137005 AGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAA 137064 ||||||| || || |||| ||| |||| | |||||||| ||| ||||| || ||| Sbjct 30754 AGCACTCGTCGCACATACATATTTGAAGTGTATGGCTCGAATCCTTCATTGTTTCCTAAA 30695 Query 137065 ATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTGT 137124 ||||| ||||| | ||||||||||| ||| | | ||| ||||| |||| ||||||| Sbjct 30694 ATCTGGGCAGTGGAAGCTGTCGGCATTGGAGCCAATAGCAACGAATTTCGTACACCGTGT 30635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445022689728480