Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5713 95.1 1e-14 seq11483 87.8 2e-12 seq9555 87.8 2e-12 seq11230 86.0 6e-12 seq11905 84.2 2e-11 >seq5713 Length=114977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||||||||| || || ||||| || |||||||||| | |||| | || ||| Sbjct 40983 ACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCC 40924 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || ||||| || || || | || ||||| || | |||| | ||||| || || Sbjct 40923 AATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCT-TG 40865 Query 35648 ATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| |||| | | | | | || ||||| | ||| || || | |||||| ||||| Sbjct 40864 AATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTT 40805 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| ||||||||||| || || ||||||||| Sbjct 40804 ACCAGTCAAAGTTTTGACGAAGATCTGCATT 40774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||||||||| || |||||||| || || ||||||| | |||| | || || Sbjct 41211 ACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCT 41152 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || || || || || || | || ||||| || | |||| | ||| || || || Sbjct 41151 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCT-TG 41093 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| |||| | ||| || | | ||||| | ||| || || | ||| || ||||| Sbjct 41092 AATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTT 41033 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||||||||||| || || |||||||| Sbjct 41032 ACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 >seq11483 Length=76730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||||||||| || || | |||||||| | || || | || || || || || ||| Sbjct 51035 TTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGATC 50976 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 || | |||||| |||| |||| | ||||| ||| ||||| || || | | | | Sbjct 50975 AATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCTCA 50916 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || |||| | ||| || || | || || ||||||||||| | |||||||| || Sbjct 50915 ATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGAAA 50856 Query 35729 ATCTGCATTCTGT 35741 ||||||| ||||| Sbjct 50855 ATCTGCA-TCTGT 50844 >seq9555 Length=64705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| ||| ||| |||| |||| || || || || || || || Sbjct 29916 TCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAG 29857 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | || ||||| | || | | || ||||| |||||| ||| | || Sbjct 29856 ATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTT 29797 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || || |||| ||||||||||| ||||| | ||||||||| Sbjct 29796 TCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACG 29737 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 29736 AAGATCTGCAT 29726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||||| |||||||| || | Sbjct 30991 CCACCACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTC 30932 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| ||| || || || || ||||| | || ||||| | || Sbjct 30931 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30872 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || ||||| |||||| ||| | || | | |||||| || || || Sbjct 30871 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 30812 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||||| || || | |||||||| || || ||||| Sbjct 30811 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| ||| ||| |||| |||| || || || || || || || Sbjct 30144 TCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAG 30085 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | || ||||| | || | | || ||||| |||||| ||| | || Sbjct 30084 ATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTAGCCTTGACGTTT 30025 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || || |||| ||||||||||| ||||| | ||||||||| Sbjct 30024 TCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACG 29965 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 29964 AAAATTTGCAT 29954 >seq11230 Length=416 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||||||||||| | || || || ||||| ||||| || | Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| ||| || || || || ||||| | || ||||| | || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || ||||| |||||| ||| | || | | |||||| || || || Sbjct 191 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACT 132 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||||| || || | |||||||| || || ||||| Sbjct 131 TCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq11905 Length=336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||||||||||| | || || ||||| |||||||| ||| | Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| |||| || || ||||| || || || ||||| | || ||||| | || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||||| ||| ||| || || | || | | |||||| || || || Sbjct 207 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAAC 265 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || |||||||| || || | ||||||||| || || ||||| Sbjct 266 TTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450720971516120