Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6746 192 8e-44 seq5251 156 6e-33 >seq6746 Length=106662 Score = 192 bits (212), Expect = 8e-44 Identities = 322/461 (70%), Gaps = 6/461 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||||||| || || |||| || ||||| || |||||||||||||| | ||| Sbjct 29692 TCAAATTCATCACCGTAACAATCAGATAAACCAGGGCAGTCATTTGGACACATAA--GAC 29635 Query 69577 CACACATCATCATCCTT--AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| | | ||| ||| ||| |||| ||| || |||||||| ||||| |||| Sbjct 29634 TCCACGTTTGGTTACTTTCAACACGTCTCATGAATTCGTCAGGAATCCATAGAGCGATAA 29575 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | |||||| ||||| ||||| || || | ||| | | || | |||||| | Sbjct 29574 ATAAATCTCTACATCTATACTCTTCGTTACCGGAATTCATCCGTAATTCTAAAAACTCGA 29515 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 |||||| | |||||| ||||||| ||| || || | | || |||| ||| || |||| Sbjct 29514 AAATATCCGTATGCCAGGGTTCTAAATAGATGGCGAAAGCGCCTGGTCTTTTGTTGCCTC 29455 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | |||||| ||||||| ||| |||||| ||||| |||| || |||||| | Sbjct 29454 CTTGATCGACGTATCTCGCAGTGTAATTGTAGACTTGAAGCATAGGAACAAGACCATTTG 29395 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 || ||||| ||||||||||||||||| | | | ||| | ||| | | Sbjct 29394 ATACGCCATTCGTTCCAGAAATATAACTGTTGGTACCTCTGATACAATGTATATGCACTC 29335 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA-CGTTTCAATGTGTCATATATACCC 69933 | |||||||| || ||| || || | ||| ||| || || | || | | |||||||| Sbjct 29334 CGATTCCTCCGGCAGATTTGGAAATCAAAGCGCAAGCGGTT-AGGGTATTAAATATACCC 29276 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 || ||||| || ||| |||| || | ||||||||| || Sbjct 29275 TCAATGCTGTCCTCTTGCATGGCAACCAAAAAACAGCTGGA 29235 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68435 CTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATAT 68494 |||| |||||||| ||| |||||| || || | |||||||||||||| || | Sbjct 31199 CTAGTTTCCATCCGAAGAGATGCATTGAAGTGAGGGTACTGTAACTTGGATCGGCCATGT 31140 Query 68495 GAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA 68554 ||| ||| | |||| |||||| || ||||||||||| || || |||||||| | | Sbjct 31139 GAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTGTCGGCGGCCATTTTCAACA 31080 Query 68555 TACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATC 68603 | ||||||| ||||||||||| || ||| ||| | ||| | ||| Sbjct 31079 CAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAAGATCTTTCAAATC 31031 >seq5251 Length=56147 Score = 156 bits (172), Expect = 6e-33 Identities = 170/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || ||||||||| || || | ||| ||||||||||| | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| ||||||||| || ||||| ||||| ||||| || |||||||||| Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 39759 CAACAAGTCTCTCTCC----GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCA 39814 |||| | ||| || || ||| ||| | |||| | ||||| || |||||||| Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTT-TTTCATCAGCAATCCATCTCAAAGCCCAATCT 14728 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || || ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 14729 GCCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 39309 GTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGC 39368 ||||||||||||| || | | ||||||||||| | ||| || ||||| || ||||| | Sbjct 14073 GTGACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTAC 14132 Query 39369 CTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCAT 39413 | | ||||||||| ||||||| |||||||||||||| | |||| Sbjct 14133 CATTCAATGATATTATTTCCATAAAATCAAACGGATTGCTGGCAT 14177 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || |||||||| ||||| || |||| | |||| ||||||||||| | Sbjct 14293 AATCTATCAGCGACAAATTCAATGTACGTCGTCATTAAATCACTGTTCATTCCTATCATA 14352 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 ||||||| ||| | || | ||| |||| ||| || | || || || || || Sbjct 14353 GATACTGGTAAAGCTTTAGTCAAAAATTCTTGTTCTATTACGACAGCGTCACGAATAATT 14412 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 |||| | | ||| |||| ||| || | |||| ||| ||||| ||||| ||||| Sbjct 14413 TCAGTTATTTCTTCAACACTAGGTTTCTGAACCAAATATTTGAACATCAAGCAAGCGAAA 14472 Query 39626 TCACAATGTAGGCCCT 39641 ||| ||||| |||| Sbjct 14473 TCAGTATGTAAACCCT 14488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686798130405960