Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6746 145 6e-30 seq5251 118 8e-22 seq908 118 8e-22 seq11349 105 5e-18 >seq6746 Length=106662 Score = 145 bits (160), Expect = 6e-30 Identities = 240/345 (70%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||| ||||| |||||| |||||||||| |||| | | ||||||||||| | || | Sbjct 4131 AGGGGATCTCGGTCCTATTTATGGATTCCAGTGGAGGCATTTTGGAGCCGAGTACAAAGA 4072 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||||| | | ||||| || |||| | |||||||| || | ||| ||| ||| Sbjct 4071 TATGTTCGCCGATTACACTGGCCAAGGCGTTGATCAATTGCAAAATATAATAAATATGAT 4012 Query 40985 TAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| || |||| ||||| || | || || || || || ||||| || || | Sbjct 4011 CAAAACCAATCCTAACGATA---GAAGAATGATTTTATGTGCCTGGAATCCTGTTGATTT 3955 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 || | |||||||| || || ||||||| ||| || ||||| || |||||||| Sbjct 3954 ACCTAAAATGGCATTACCTCCGTGTCATTGCTTAGTGCAATTTTATGTAGCTAATGGTGA 3895 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 || || |||| |||||||| | || | ||| ||||| ||||| || || || || || Sbjct 3894 GCTTTCGTGTCTCATGTATCAACGCTCTGCTGATATGGGTCTAGGTGTACCTTTCAATAT 3835 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAA 41206 ||| ||||| | ||||||| |||||||| || || |||| || Sbjct 3834 AGCAAGTTACTCCTTGCTCACTTATATGATCGCTCATATTACAAA 3790 >seq5251 Length=56147 Score = 118 bits (130), Expect = 8e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 |||||| |||||||||| ||||| || | || || |||||||| || || || Sbjct 15061 AAACCAGAAGAAAAACAATTTATTTCCCACATCTTAGCCTTTTTTGCAGCCTCTGATGGC 15002 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA-TTACCAGAAGCACG 43938 || ||||| || || |||||| || || |||||||| ||| ||||| ||||| | Sbjct 15001 ATTGTCAACGAGAACTTGGTTGAACGTTTCAATCAAGAAGTGCAAGTTACC-GAAGCCAG 14943 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || ||| ||||| || ||||| ||||| |||||| | ||||| || ||||| ||| | Sbjct 14942 ATTTTTCTATGGATTCCAAATCGCCATGGAAAATGTACATTCTGAGATGTATAGTAAATT 14883 Query 43999 GATAGATACGTACATCAAAGAT 44020 |||||||||||| || || ||| Sbjct 14882 GATAGATACGTATATAAAGGAT 14861 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || ||||||||||||||||||| || || ||| | || ||||| ||||||||||||||| Sbjct 14169 AATCCGTTTGATTTTATGGAAATAATATCATTGAATGGTAAAACGAACTTTTTTGAAAAA 14110 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | ||||| |||||| || ||| || || ||| Sbjct 14109 AGAGTTGGTGAATATAAGAGAAGCGGAGTTATG 14077 >seq908 Length=107432 Score = 118 bits (130), Expect = 8e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 ||||||||||| ||| || |||| | || || || |||||| ||| |||||||| Sbjct 56788 GGATGTAAACACGTTAAAGGTATTTTATTGTACGGACCTCCGGGTACTGGTAAAACATTG 56729 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCT 19449 || || | || || ||||| | | | || | ||||| || || ||||||||| Sbjct 56728 ATGGCTCGTCAAATTGGTAAAATGTTGAATGCACGAGAACCCAAGATAGTGAATGGTCCT 56669 Query 19450 GAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGAC 19509 |||| || |||||||||| ||| |||| |||| |||| | || || |||||||| || Sbjct 56668 CAAATATTGGATAAATATGTCGGTGAATCAGAAGCAAATATTCGCCGATTGTTTGCGGAT 56609 Query 19510 GCTGAAGAAGAACAAAAA 19527 |||||||||||| ||||| Sbjct 56608 GCTGAAGAAGAAGAAAAA 56591 Score = 105 bits (116), Expect = 5e-18 Identities = 122/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 ||| ||||| || ||| | |||||| | || || || |||||| |||||| |||| || Sbjct 56500 TTTACACATCATCATATTCGATGAAATTGATGCTATTTGTAAGGCAAGAGGATCTGTTGG 56441 Query 19608 A---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | ||| || || |||||||| ||||| ||||| | | | ||| | || ||||| Sbjct 56440 AGGAAATACAGGTGTTCATGACACCGTTGTTAATCAGTTGTTAGCCAAAATCGATGGTGT 56381 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | | ||||| || |||||||| |||||||| |||||||||||| Sbjct 56380 TGAACAACTCAACAATATTTTGGTTATTGGTATGACTAATAGA 56338 >seq11349 Length=21738 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 |||| ||||| ||| | || |||| | || || || |||||| ||| |||||||| Sbjct 1047 GGATTGAAACACGTTAGAGGTATTTTATTGTACGGACCTCCGGGTACTGGTAAAACATTG 988 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCT 19449 || || | || || ||||| | | | | | ||||| || || ||||||||| Sbjct 987 ATGGCTCGTCAAATTGGTAAAATGTTGAATGCTCGAGAACCCAAGATAGTGAATGGTCCT 928 Query 19450 GAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGAC 19509 | || || |||||||||| ||| |||| |||| |||| | || || |||||||| || Sbjct 927 CAGATATTGGATAAATATGTCGGTGAATCTGAAGCAAATATTCGCCGATTGTTTGCGGAT 868 Query 19510 GCTGAAGAAGAACAAAAA 19527 |||||||||||| ||||| Sbjct 867 GCTGAAGAAGAAGAAAAA 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397393565748445