Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6746 82.4 6e-11 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 ||||| ||||| || ||||| | ||||| || || || || || ||||| || || ||| Sbjct 3799 TGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACACCTAGACCC 3858 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCTCACGTAAAACTG 30072 || || | || | || || | ||||||| ||||| || | ||| || ||||| || Sbjct 3859 ATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTCACCATTAGCT-ACATAAAATTG 3917 Query 30073 ACACATGGCG-TGGCACGGAGGAAGAGCCATG--AGGCCCAAGTCTTTGGGGTTCCAGGC 30129 ||| || || |||||||| | ||||| ||| || || || |||||||| Sbjct 3918 -CACTAAGCAATGACACGGAGGTAATGCCATTTTAGGT--AAATCAACAGGATTCCAGGC 3974 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 30189 || | || || | || || | || ||| | |||| | | | ||||||| Sbjct 3975 ACATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTTTGCAA 4034 Query 30190 CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30249 ||||| || || || | ||| || || ||| || ||||||| ||||| ||||| Sbjct 4035 TTGATCAACGCCTTGGCCAGTGTAATCGGCGAACATATCTTTGTACTCGGCTCCAAAATG 4094 Query 30250 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 |||||||||||| || || | || || || || || Sbjct 4095 CCTCCACTGGAATCCATAAATAGGACCGAGATCCCC 4130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406246574857788