Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5713 111 1e-19 seq11905 109 3e-19 seq9601 98.7 6e-16 seq9555 98.7 6e-16 seq11230 95.1 8e-15 >seq5713 Length=114977 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | |||||||| | ||| |||||||| || |||||||| || Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| ||||| || || | ||| || || || || || Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||| || ||| ||| ||| | ||||||| | ||| || || | || || Sbjct 41109 ATTCCCTCTTTATCT-TGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGAC 41051 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || ||||| || ||||||||||| Sbjct 41050 TTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 >seq11905 Length=336 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| ||||||||||| || ||| || ||||| ||||| || || | |||| Sbjct 96 AGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTT 155 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || ||||| || || || | |||||||| || || | || || Sbjct 156 CCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCT 215 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | |||||||| ||| ||||| | || Sbjct 216 TTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGT 274 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||||| ||||| | |||||||| ||||| ||||| Sbjct 275 TATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || || || || ||| || ||||| ||||| || || Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| ||||| || ||||| || || || | |||||||| || || Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | |||||||| ||| || Sbjct 165 ATCCCTTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAAC 223 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||||||||||| ||||| | |||||||| ||||| ||||| Sbjct 224 TTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || || || || ||| || ||||| ||||| || || Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| ||||| || ||||| || || || | |||||||| || || Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | |||||||| ||| || Sbjct 30643 ATCCCTTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAAC 30585 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||||||||||| ||||| | |||||||| ||||| ||||| Sbjct 30584 TTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || || || || ||| || ||||| ||||| || || Sbjct 29952 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 29893 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| |||||||| ||||| || || || | |||||||| || || Sbjct 29892 AACGTTCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 29833 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| | || ||| | || ||||| ||| || Sbjct 29832 ATACCTTCTTTGTCTTGGATCTTA-GCCTTGACGTTTTCGATCGTGTCCGACGGCTCGAC 29774 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || |||||||| || || | |||||||| || ||||||||||| || Sbjct 29773 TTCCAAAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTAT 29720 >seq11230 Length=416 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| ||||||||||| || ||| || || ||||| || || || | |||| Sbjct 302 AGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTG 243 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| ||||| || || || | |||||||| || || | || || Sbjct 242 CCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCT 183 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | |||||||| ||| ||||||| || Sbjct 182 TTGTCTTGGATC-TTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGT 124 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| ||||| | ||||||||| ||||| ||||| Sbjct 123 GATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314680160799137