Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11905 98.7 7e-16 seq11483 93.3 3e-14 seq5713 87.8 1e-12 seq9601 86.0 4e-12 seq9555 86.0 4e-12 >seq11905 Length=336 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || ||| || || | || || || || Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| |||||| ||||| |||||||||||| | || | Sbjct 253 GAC-----ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCG 199 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || || |||||||| ||| | || |||| | | | ||| ||| | Sbjct 198 ACCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACT 139 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||| ||| | |||||||| || ||| | ||||| || Sbjct 138 ACAACATCCAAAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGG 87 >seq11483 Length=76730 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||| || || || ||| ||||| | || |||||| || Sbjct 50848 ATGCAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCC 50907 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| |||||||| || || || || |||||| |||| ||| | Sbjct 50908 GACTCGATTGAGAAT--GTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATC 50965 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || || ||||||||||| || || | | | | |||||| || || | Sbjct 50966 AGCAGAGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAACCTTGTCGGACTATA 51025 Query 27968 ACATCCAAAAAG 27979 |||| ||||||| Sbjct 51026 ACATTCAAAAAG 51037 >seq5713 Length=114977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 27783 TAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA 27842 ||| |||||||| || || || |||||| | ||||| ||| || || | || ||||| Sbjct 40768 TAGAAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGA 40827 Query 27843 AAGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 | | ||| | || | ||| || ||| ||||| || || ||||| |||| Sbjct 40828 ACCAAGCGATACCATCGAGAAT--GTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCC 40885 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || |||||||| | || || || || ||||||||||| || | | | | | ||| Sbjct 40886 CCAGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCC 40945 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||||||||| ||||| |||||||| | || ||| | || || Sbjct 40946 GATTACAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 >seq9601 Length=294 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || ||| || || | || || || || Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| |||||| ||||| ||||||||||| | || | Sbjct 211 GAC-----ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCG 157 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || || |||||||| ||| | || |||| | | | ||| ||| | Sbjct 156 ACCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACT 97 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||| ||| | || || || || ||| | ||||| || Sbjct 96 ACAACATCCAAAAAGAATCCACCCTTCACTTAGTATTACGTCTTCGTGGTGG 45 >seq9555 Length=64705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || ||| || || | || || || || Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| |||||| ||||| ||||||||||| | || | Sbjct 30597 GAC-----ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCG 30651 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || || |||||||| ||| | || |||| | | | ||| ||| | Sbjct 30652 ACCAACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACT 30711 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||| ||| | || || || || ||| | ||||| || Sbjct 30712 ACAACATCCAAAAAGAATCCACCCTTCACTTAGTATTACGTCTTCGTGGTGG 30763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355806499466103