Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9555 154 3e-32 seq9601 152 1e-31 seq11905 145 2e-29 seq5713 140 8e-28 seq11230 127 5e-24 seq11483 122 2e-22 seq4379 118 2e-21 >seq9555 Length=64705 Score = 154 bits (170), Expect = 3e-32 Identities = 174/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||| |||||||||||||| || || | ||| | Sbjct 29947 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 29888 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || |||| ||||| || || || || |||||||| | | ||||||||| || || | | Sbjct 29887 TC-TTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATAC 29829 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||| |||||||| || ||||||||||| ||||| || || || || | Sbjct 29828 CTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCA 29769 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTAT 211119 ||||||||| |||||||| ||||| || || || | |||||| ||||| Sbjct 29768 AAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTAT 29720 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||| |||||||||||||| || || | ||| | Sbjct 30758 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 30699 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || |||| ||||| || ||||| || |||||||| | | ||||||||| || || | | Sbjct 30698 TC-TTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCC 30640 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||| ||||| || ||| ||||||||||| ||||| || ||||| || | Sbjct 30639 CTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTA 30580 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| |||||||| || || || | ||||| Sbjct 30579 AAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||| |||||||||||||| || || | ||| | Sbjct 30175 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 30116 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || |||| ||||| || || || || |||||||| | | ||||||||| || || | | Sbjct 30115 TC-TTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATAC 30057 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||| |||||||| || ||||||||||| ||||| || || || || | Sbjct 30056 CTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCA 29997 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| |||||||| ||||| || || || | ||||| Sbjct 29996 AAGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | | || | |||||| ||||| || ||||||||||| || || | ||| | Sbjct 30986 ACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGT 30927 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || | |||||||||| ||| || || |||||||| | | ||||||||| || || | | Sbjct 30926 TC-TGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGC 30868 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||| |||||||| || ||||||||||| ||||| || || || || | Sbjct 30867 CTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCA 30808 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| ||||| || || || || | ||||| Sbjct 30807 AAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq9601 Length=294 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||| |||||||||||||| || || | ||| | Sbjct 50 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAA-CG 108 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | ||||| ||||| || ||||| || |||||||| | | ||||||||| || || | | Sbjct 109 TTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCC 168 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||| ||||| || ||| ||||||||||| ||||| || ||||| || | Sbjct 169 CTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTA 228 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| |||||||| || || || | ||||| Sbjct 229 AAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq11905 Length=336 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||| ||||| |||||||||||||| || || | ||| || ||||| ||||| || || Sbjct 111 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAA-CGTTCTTCCGTCTTCGAGTTG 169 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||| || || | ||||| ||||| ||||| || Sbjct 170 CTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATTTT 229 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||||||||| ||||| || ||||| || | ||| ||||| ||||| || Sbjct 230 AGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGT 289 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || | ||||| Sbjct 290 GAGAGTTTTCACGAAAATTTGCAT 313 >seq5713 Length=114977 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || | ||| || ||||| ||||||||||| |||||||| | || || Sbjct 41680 ACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGT 41621 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||| ||||| | || || || |||||||| || |||||||| || || |||| ||| Sbjct 41620 TCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCC 41561 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || || || ||||||||| |||||||| || | ||| || ||||| Sbjct 41560 TTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAG 41501 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || || || | ||||| Sbjct 41500 CGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 134 bits (148), Expect = 3e-26 Identities = 153/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||||||||| || ||||| | ||| || ||||||||||||| || || || Sbjct 40972 AGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACC 40913 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || ||||| || || || |||| ||||||||| || || || || ||| Sbjct 40912 AGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCTTT 40853 Query 211037 CACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || |||||||| || ||| ||| || ||||| ||||| || || || || | Sbjct 40852 TACATTCTCGATGGTATC---GCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAA 40796 Query 211094 AGTCTTTACAAACACCTGCATTTT 211117 ||| || || || | ||||||||| Sbjct 40795 AGTTTTGACGAAGATCTGCATTTT 40772 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || || |||||||| |||||||| | || || ||||||||||| || || ||||| Sbjct 41200 AGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41141 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || ||||| || || || |||| ||| || || || || || || ||| Sbjct 41140 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGAATTTTGGCTTT 41081 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||||| ||||| || | ||| || ||||| || || || || || || | ||| Sbjct 41080 AACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGT 41021 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 41020 TTTAACGAAAATCTGCAT 41003 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||| || |||||||| | || || ||||||||||| || || ||||| Sbjct 41428 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41369 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || ||||| || || || |||| |||||| || || || || || ||| Sbjct 41368 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTT 41309 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| || |||||||| || | ||| || ||||| || || || || || || | || Sbjct 41308 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 41249 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 41248 TTTGACGAAGATTTGCAT 41231 >seq11230 Length=416 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||| ||||| ||||| || || || || || | ||| | || | |||||||||| ||| Sbjct 287 TGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTC-TGCCATCTTCCAACTG 229 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||||||||| || || | ||||| ||||| |||||||| Sbjct 228 TTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTT 169 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||||||||| ||||| || || || || | ||||||||| ||||| || Sbjct 168 AGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGT 109 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | ||||| Sbjct 108 GAGCGTTTTCACGAAAATTTGCAT 85 >seq11483 Length=76730 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| |||||||| |||| | ||| ||||||||||| | || || || ||||||| Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || || || || |||| |||||||| ||||| ||||| ||||| || || | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || | ||| || ||| || ||||| || || || || |||||||| || || || | Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 50857 AAATCTGCAT 50848 >seq4379 Length=409 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||| || |||||||| | || || ||||||||||| || || ||||| Sbjct 213 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 154 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| || ||||| || || || |||| |||||| || || || || || ||| Sbjct 153 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAATTTTAGCTTT 94 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| || |||||||| || | ||| || ||||| || || || || || || | || Sbjct 93 CACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGT 34 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 33 TTTGACGAAGATTTGCAT 16 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 210951 GTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 || ||||||||||||| || || || |||||||| || ||||| || || || |||| | Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACC 211067 |||||||| || || || || ||| || || |||||||| || ||| ||| || Sbjct 347 CCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATC---GCTTGGTTCGACT 291 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || || | || || || || | ||||| Sbjct 290 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158960577276485