Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5713 113 4e-20 seq4379 113 4e-20 seq8209 93.3 4e-14 >seq5713 Length=114977 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | |||||||||| || |||||||| ||||||||||||| Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || || || |||||||| || || || ||||| ||||| || | ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| ||| | || | | |||||||| | || || Sbjct 41337 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 41278 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| ||| |||| || || | ||||| || ||||||||||| Sbjct 41277 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | |||||||||| || || ||||| ||||||||||||| Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || || || |||||||| || || || ||||| ||||| || | ||| Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||| | | ||| ||| | || | || | | | |||||||| | || || Sbjct 41109 ATTCCCTCTTTAT-CTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGAC 41051 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| ||| |||| || |||| |||||||| || || ||||| Sbjct 41050 TTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 |||||||| || || ||| |||||||| ||||||||||| | || |||| | |||| Sbjct 41670 AACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTCT 41611 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | ||||| || || || || ||||| || || || | ||| | | || || || Sbjct 41610 TCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATCT 41551 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||||| ||| | || | | |||||||| | || || || | ||| ||| || Sbjct 41550 TGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTT 41491 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| || ||||||||||| Sbjct 41490 TTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq4379 Length=409 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | |||||||||| || |||||||| ||||||||||||| Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || || || |||||||| || || || ||||| ||||| || | ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| ||| | || | | |||||||| | || || Sbjct 122 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACT 63 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| ||| |||| || || | ||||| || ||||||||||| Sbjct 62 TCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 >seq8209 Length=47891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || ||||| |||||||| | || |||||||| ||||| || || | | Sbjct 19112 CCTCCTCTCAATCGTAAGACCAAATGCAAAGTTGATTCTTTTTGGATATTGTAGTCAGAA 19053 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || ||| | || |||||||||||||| || || || | |||||||||||| | ||| Sbjct 19052 AGGGTACGTCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGG 18994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429478124963657