Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9555 167 6e-36 seq11905 158 3e-33 seq9601 156 1e-32 seq5713 156 1e-32 seq11230 145 2e-29 seq4379 136 9e-27 seq11483 104 6e-17 >seq9555 Length=64705 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || | ||| || |||||||||||||||| ||||| ||| ||| || Sbjct 30175 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 30116 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||| || || || || |||||||| | || |||||||||||| || ||||| Sbjct 30115 TCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACC 30056 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| || |||||| ||||| || | || || || || Sbjct 30055 TTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAA 29996 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || ||||| | |||||| | ||| | |||||| Sbjct 29995 AGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 Score = 165 bits (182), Expect = 2e-35 Identities = 174/228 (76%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || | ||| || |||||||||||||||| ||||| ||| ||| || Sbjct 29947 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 29888 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||| || || || || |||||||| | || |||||||||||| || ||||| Sbjct 29887 TCTTCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACC 29828 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| || |||||| ||||| || | || || || || Sbjct 29827 TTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAA 29768 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 |||||||| || ||||| | |||||| | ||| | ||||| ||||| Sbjct 29767 AGTGATCGTTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATGTTTAT 29720 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || | ||| || |||||||||||||||| ||||| ||| ||| || Sbjct 30758 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 30699 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||| || ||||| || |||||||| | || |||||||||||| || || || Sbjct 30698 TCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCC 30639 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| ||| || || || |||||| ||||| || | || || |||| Sbjct 30638 TTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTA 30580 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| || || || | |||||| | ||| | |||||| Sbjct 30579 AAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || |||||||| ||||||| ||||| || ||| || Sbjct 30986 ACGAAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGT 30927 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | ||| || || |||||||| | || |||||||||||| || || || Sbjct 30926 TCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCC 30867 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| || |||||| ||||| || | || || || || Sbjct 30866 TTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAA 30807 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || || || | ||||| | ||| | |||||| Sbjct 30806 AGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq11905 Length=336 Score = 158 bits (174), Expect = 3e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||||||||||| ||||| ||| ||| ||||| || ||||| || ||| Sbjct 111 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGC 170 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || |||||||||||| || |||||||| ||||||||||| ||| Sbjct 171 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGAT-TTT 229 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || |||||| ||||| || | || || ||||| || ||||| || || || Sbjct 230 AGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGGT 289 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||| | ||| | |||||| Sbjct 290 GAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || | ||| || |||||||||||||||| ||||| ||| ||| || Sbjct 50 ACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGT 109 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||| || ||||| || |||||||| | || |||||||||||| || || || Sbjct 110 TCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCC 169 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| ||| || || || |||||| ||||| || | || || |||| Sbjct 170 TTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTA 228 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| || || || | |||||| | ||| | |||||| Sbjct 229 AAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq5713 Length=114977 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | ||| || |||||||||||||||| ||| ||||| | | ||| Sbjct 41680 ACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGT 41621 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||||| || || ||||||||||| || |||||||| || || ||||| || Sbjct 41620 TCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCC 41561 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| ||||| || ||| || ||||| |||||||| || || ||| || || | Sbjct 41560 TTCCTTATCTTGAAT-TTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGA 41502 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || || || ||||| | ||| | |||||| Sbjct 41501 GCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 150 bits (166), Expect = 4e-31 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||||| ||||||||||| | |||||| |||||||| | || || || Sbjct 40972 AGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCCAATTGTTTACC 40913 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| || ||||| || || || ||||| |||||||| ||||| || ||| |||| Sbjct 40912 AGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAAT-TTTGGCTT 40854 Query 225636 C-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 ||| |||||||| || | ||| || || | |||||| || || || ||||||| Sbjct 40853 TTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGATGGTTTTACCAGTCAAAG 40794 Query 225695 TTTTTATGAACACTTGCATTTT 225716 |||| | ||| | |||||||| Sbjct 40793 TTTTGACGAAGATCTGCATTTT 40772 Score = 136 bits (150), Expect = 9e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||||| | |||||| ||||||||||| || || || Sbjct 41428 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41369 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 |||||||| || ||||| || || || ||||| ||||| || ||||| || ||| || | Sbjct 41368 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 41310 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 ||||| |||||||| || || ||| || || | ||| || || || || || || | Sbjct 41309 TCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATG 41250 Query 225695 TTTTTATGAACACTTGCAT 225713 |||| | ||| | |||||| Sbjct 41249 TTTTGACGAAGATTTGCAT 41231 Score = 127 bits (140), Expect = 5e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| ||||||| ||| ||||||| | |||||| ||||||||||| || || || Sbjct 41200 AGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 41141 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||||| || ||||| || || || ||||| || || || ||||| || ||| |||| Sbjct 41140 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCTTGAAT-TTTGGCTT 41082 Query 225636 CACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | | || | ||||| || || ||| || || | ||| || || || || ||||||| Sbjct 41081 TAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAG 41022 Query 225695 TTTTTATGAACACTTGCAT 225713 |||| | ||| | ||||| Sbjct 41021 TTTTAACGAAAATCTGCAT 41003 >seq11230 Length=416 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||||||||| || | |||||| || ||| ||||| |||||||| | ||| Sbjct 287 TGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAACTGT 228 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || |||||||||||| || || ||||| |||||||||||||| Sbjct 227 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTA 168 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || |||||| ||||| || | || || || || |||||||| || || || Sbjct 167 GCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGTG 108 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 107 AGCGTTTTCACGAAAATTTGCAT 85 >seq4379 Length=409 Score = 136 bits (150), Expect = 9e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||||| | |||||| ||||||||||| || || || Sbjct 213 AGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCC 154 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 |||||||| || ||||| || || || ||||| ||||| || ||||| || ||| || | Sbjct 153 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 95 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 ||||| |||||||| || || ||| || || | ||| || || || || || || | Sbjct 94 TCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATG 35 Query 225695 TTTTTATGAACACTTGCAT 225713 |||| | ||| | |||||| Sbjct 34 TTTTGACGAAGATTTGCAT 16 Score = 96.9 bits (106), Expect = 8e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||||| |||||||| | || || ||||||||||| || ||||| || || || ||||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 225610 CCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||| ||||| || ||| || || ||| |||||||| || | ||| || || Sbjct 347 CCTTCCTTATCTTGAAT-TTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTC 289 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||| || || || || || || ||||| | ||| | |||||| Sbjct 288 GAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq11483 Length=76730 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | || || || | ||| ||||| |||||||||| || || |||||||||| Sbjct 51037 CTTTTTGAATGTTATAGTCCGACAAGGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAGA 50978 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || || || || || |||||||||||||| || || ||||| || || ||| | Sbjct 50977 TCAATCTCTGCTGATCCGGTGGAATACCTTCCTTATCCTGAATCTTCTGTTTGACATTCT 50918 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || | ||| || | ||| || || | || || || || ||||| | ||||| | || Sbjct 50917 CAATCGAGTCGGAAGGTTCGACTTCGAGGGTAATTGTTTTACCCGTGAGTGTTTTCACGA 50858 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 50857 AAATCTGCAT 50848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192334265024966