Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq5713 114 1e-20 seq4379 114 1e-20 >seq5713 Length=114977 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || ||||| ||||||||||||||||| ||||||| Sbjct 41457 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 41398 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | |||||| | ||||||||| || | || || | ||| || ||| ||| Sbjct 41397 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41338 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| |||||||| | | || || ||| ||| Sbjct 41337 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGG--GTTCGA 41280 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||||||||| || || |||||||| | || |||||||| Sbjct 41279 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 109 bits (120), Expect = 4e-19 Identities = 169/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 101004 TACTA-TTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTG 101062 ||||| ||||| || || | ||| ||||||| ||||| || ||||||||||| ||||| Sbjct 41694 TACTAATTGCCACCACGAAGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTA 41635 Query 101063 TAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGG 101122 ||||| | | |||| | ||||| |||||||| || || | || || | |||||| Sbjct 41634 TAATCAGAGAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGA 41575 Query 101123 TCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTG 101182 ||| ||| | ||||| || || |||||| |||||| | | | || || || Sbjct 41574 TCTGGGGGAATTCCTTCCTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTG 41515 Query 101183 GACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | ||| ||||| ||||||||||| || || |||||||| | || |||||||| Sbjct 41514 G--GTTCGACTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || ||||| ||||| ||||| ||||| ||||||| Sbjct 41229 CCTCCTCTCAATCGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAG 41170 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | |||||| | ||||||||| || | || || | ||| || ||| ||| Sbjct 41169 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 41110 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | || ||||| || |||||| ||| || | | | || || ||| ||| Sbjct 41109 ATTCCCTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGG--GTTCGA 41052 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||||||||| || ||||| ||||||| ||||| ||||| Sbjct 41051 CTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || ||||| ||||||||||| ||||||||||||| Sbjct 41001 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAA 40942 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | ||||||||||||||| || || | || || | ||| || ||| ||| Sbjct 40941 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGA 40882 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||| || || |||||| ||| |||| | | || || | | ||| Sbjct 40881 ATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTG--GTTCGA 40824 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATT 101242 ||||| || || ||||| || ||||| ||||| | || || |||||| || Sbjct 40823 CTTCGAGCGTGATGGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTTT 40771 >seq4379 Length=409 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || ||||| ||||||||||||||||| ||||||| Sbjct 242 CCTCCTCTCAATCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAG 183 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | |||||| | ||||||||| || | || || | ||| || ||| ||| Sbjct 182 AGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGA 123 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| |||||||| | | || || ||| ||| Sbjct 122 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGG--GTTCGA 65 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||||||||| || || |||||||| | || |||||||| Sbjct 64 CTTCGAGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409596448561251