Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5251 127 2e-24 >seq5251 Length=56147 Score = 127 bits (140), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 4792 ATTTACTT--TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 |||||||| |||||| || || | ||||| || ||||| | | |||||||| || Sbjct 14840 ATTTACTTACTTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTC 14899 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 |||||||| |||||| || || || || ||||| || || |||| ||||| || ||||| Sbjct 14900 AGAATGTACATTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTG 14959 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| | | || | ||| || ||||| ||||| || || || ||| ||||||||| Sbjct 14960 CACTTCTTGATTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAA 15019 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 ||| || || | || || ||||| | | ||| || || || || ||| ||| Sbjct 15020 AAAGGCTAAGATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCA 15073 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 |||| ||||||| || |||||||||||||||| |||||| || || ||||||||||| Sbjct 14564 ATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTCAGCCAAAATATT 14623 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 || ||||| || ||||| || || ||||| || || ||||| || || | || Sbjct 14624 GCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCAACGATTCTTTCG 14683 Query 4704 CCGAACGAGCTGGCTTTGTCTT---TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760 || || | | ||||| || | ||||||| | || ||||| | || ||||||||| Sbjct 14684 CCAAAAG---TAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCCTTTTTCTTA 14740 Query 4761 ACGCACGGAATTGT 4774 || || || ||||| Sbjct 14741 ACACATGGCATTGT 14754 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 |||||||| |||||||||||||| ||||| |||||||| ||||| | |||||| ||| | Sbjct 15162 ACTTCTTCGACAGTCCAAAACGAGGCTTCAGCTTTTTTATACATGGCCCAAATGTCATCA 15221 Query 5109 TACTGAATCGGAAGTATGACAAATCTG 5135 || | ||| || ||||| | |||||| Sbjct 15222 TATTTAATAGGCAGTATTAAGAATCTG 15248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426982517047037