Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6746 168 9e-37 seq5251 118 1e-21 >seq6746 Length=106662 Score = 168 bits (186), Expect = 9e-37 Identities = 322/467 (69%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||||||| || || |||| || |||||||| |||||||| ||||| | ||| Sbjct 29692 TCAAATTCATCACCGTAACAATCAGATAAACCAGGGCAGTCATTTGGACACATAA--GAC 29635 Query 77985 CAGTCACCATC--TTCCTT--AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| | || ||| ||| ||| |||| || ||||| ||||||||||| || Sbjct 29634 TC--CACGTTTGGTTACTTTCAACACGTCTCATGAATTCGTCAGGAATCCATAGAGCGAT 29577 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| ||||| ||||| ||||| || || | |||| | | || | |||||| Sbjct 29576 AAATAAATCTCTACATCTATACTCTTCGTTACCGGAATTCATCCGTAATTCTAAAAACTC 29517 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | |||||| | |||||| ||||||| ||| || || | | | || |||| ||| || || Sbjct 29516 GAAAATATCCGTATGCCAGGGTTCTAAATAGATGGCGAAAGCGCCTGGTCTTTTGTTGCC 29457 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 ||| ||||| | ||||| || |||| ||| || ||| | ||| |||| || ||| || Sbjct 29456 TCCTTGATCGACGTATCTCGCAGTGTAATTGTAGACTTGAAGCATAGGAACAAGACCATT 29397 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT 78280 ||| ||||| ||||||||||||||||| | | | ||| |||| |||| Sbjct 29396 TGATACGCCATTCGTTCCAGAAATATAACTGTTGGTACCTCTGATA----CAATGTATAT 29341 Query 78281 ----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA-CGTTTCAATGTATCGTAG 78335 || |||||||| || || || || | ||||||| || || | |||| | Sbjct 29340 GCACTCCGATTCCTCCGGCAGATTTGGAAATCAAAGCGCAAGCGGTT-AGGGTATTAAAT 29282 Query 78336 ATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382 |||||||| || ||||| || |||| || | ||||||||| || Sbjct 29281 ATACCCTCAATGCTGTCCTCTTGCATGGCAACCAAAAAACAGCTGGA 29235 >seq5251 Length=56147 Score = 118 bits (130), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || ||||||||| || || | ||||||||||| || | ||| || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||||||||| || ||| || ||||| || || ||||| || || |||||||| Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 48285 GTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | ||| || || || | || ||| | ||||| | |||||||| ||| Sbjct 14672 ACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCC 14731 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 || ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 14732 TTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAGGAA 14775 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||||||||| || | | ||||||||| || | ||| || ||||| || ||||| || Sbjct 14075 GACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTACCA 14134 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 | ||||||||| |||||||||||||||| ||||| Sbjct 14135 TTCAATGATATTATTTCCATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694556880172960