Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6746 163 4e-35 seq5251 136 6e-27 >seq6746 Length=106662 Score = 163 bits (180), Expect = 4e-35 Identities = 234/328 (71%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||| || || |||| |||||||| || ||||| |||||||| | ||| Sbjct 29692 TCAAATTCATCACCGTAACAATCAGATAAACCAGGGCAGTCATTTGGACACATAA--GAC 29635 Query 76580 CACTCACCATCTTCCTT--AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 | | || ||| ||| ||| |||| || ||||| ||||||||||| |||| Sbjct 29634 TCCACGTTTGGTTACTTTCAACACGTCTCATGAATTCGTCAGGAATCCATAGAGCGATAA 29575 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||||| |||| ||||| || || | |||| | | |||| ||||| | Sbjct 29574 ATAAATCTCTACATCTATACTCTTCGTTACCGGAATTCATCCGTAATTCTAAAAACTCGA 29515 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 |||||| | |||||| ||||||| ||| || || | | | || |||| ||| || |||| Sbjct 29514 AAATATCCGTATGCCAGGGTTCTAAATAGATGGCGAAAGCGCCTGGTCTTTTGTTGCCTC 29455 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | ||||| | ||||| ||||||| ||| || ||| | ||| |||| || || || | Sbjct 29454 CTTGATCGACGTATCTCGCAGTGTAATTGTAGACTTGAAGCATAGGAACAAGACCATTTG 29395 Query 76818 ATGTACCATTTGTTCCAGAAATATAACT 76845 || ||||| ||||||||||||||||| Sbjct 29394 ATACGCCATTCGTTCCAGAAATATAACT 29367 >seq5251 Length=56147 Score = 136 bits (150), Expect = 6e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || ||||||||| || || | || |||||||| || | || || Sbjct 14552 TCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCTTC 14611 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| || || ||| || ||||| || || ||||| ||||| || ||||| Sbjct 14612 AGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATGCA 14671 Query 46774 ACAAGTCTCTCTCCGTAACTGGCAT---CATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | ||| || || || | || | ||| | |||||| || ||||||||| ||| Sbjct 14672 ACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTGCC 14731 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 14732 TTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAGGAA 14775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 46322 GTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGC 46381 ||||||||||||| || | | |||||||| || | ||| || ||||| || ||||| | Sbjct 14073 GTGACATAACTCCGCTTCTCTTATATTCACCAACTCTTTTTTCAAAAAAGTTCGTTTTAC 14132 Query 46382 CTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 | | ||||||||| |||||||||||||||||||||| Sbjct 14133 CATTCAATGATATTATTTCCATAAAATCAAACGGATT 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712819537356480