Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9555 129 1e-24 seq5713 129 1e-24 seq11905 127 5e-24 seq9601 125 2e-23 seq4379 123 6e-23 seq12829 100 7e-16 seq11230 98.7 2e-15 >seq9555 Length=64705 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || ||||||||||||||||| ||| || ||||| || ||||| || | Sbjct 29928 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGT 29869 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | || || ||||| | | ||| ||||| || ||||| || || Sbjct 29868 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTA 29809 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | |||| || ||| ||||| | ||| || ||||| ||||| Sbjct 29808 GCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTA 29749 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| |||||||||| |||||| || Sbjct 29748 AGAGTTTTCACGAAGATCTGCATGTT 29723 Score = 125 bits (138), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||||||||||||||| ||| || ||||| || ||||| || || Sbjct 30739 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGC 30680 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||||||||| | || || ||||| | | ||| ||||| || ||||| |||| Sbjct 30679 TTT--CCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGATTT 30622 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||| | || | |||| || ||| ||||| | ||| || ||||| || | Sbjct 30621 TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGG 30562 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| |||||||| | ||||| Sbjct 30561 TGAGAGTTTTCACGAAAATTTGCAT 30537 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || ||||||||||||||||| ||| || ||||| || ||||| || | Sbjct 30156 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGT 30097 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | || || ||||| | | ||| ||||| || ||||| || || Sbjct 30096 TTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTA 30037 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | |||| || ||| ||||| | ||| || ||||| ||||| Sbjct 30036 GCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCGTTTTTCCCGTA 29977 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| | ||||| Sbjct 29976 AGAGTTTTCACGAAAATTTGCAT 29954 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || |||||||||||||| || || ||||| |||||||| | Sbjct 30971 CAAG-TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGCCATCTTCCA 30913 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | || || ||||| | | ||| ||||| || ||||| | Sbjct 30912 ACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGA 30853 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| ||||| | ||| || ||||| | Sbjct 30852 TCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTC 30793 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||| | ||||| Sbjct 30792 CGGTGAGCGTTTTCACGAAAATTTGCAT 30765 >seq5713 Length=114977 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | ||| || ||||||||||| |||||||||| | |||||| || Sbjct 40990 TCGGAGTACCAAATGTAAAGTCGATTCTTTTTGGATATTGTAATCGGAAAGAGTTCTTCC 40931 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| || |||||||| || | ||||| || | | ||||||||||| Sbjct 40930 ATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTT 40871 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| ||| ||| |||| | | | || || ||||| || || || Sbjct 40870 ATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCGAGCGTGAT 40811 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || | ||| || ||||||| ||||||||| Sbjct 40810 GGTTTTACCAGTCAAAGTTTTGACGAAGATCTGCATTTT 40772 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | ||| || |||||||| || || ||||||| | |||||| || Sbjct 41446 TCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCC 41387 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||||| ||| ||||||||||| || | ||||| || | | |||||||| || Sbjct 41386 ATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTT 41327 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| ||| ||| |||| | | | || || ||||| || ||||| Sbjct 41326 ATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAAT 41267 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || || | || || ||||||| ||||| Sbjct 41266 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41231 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || |||||||| || ||||||| | |||||| |||||| Sbjct 41214 AGTACCAAATGTAAAGTCGATTCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCT 41155 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| ||||||||||| || | ||||| || | | ||||| || || ||| Sbjct 41154 TCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTATCT 41095 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || | || | | | || || ||||| || ||||||||| Sbjct 41094 TGAATTTTGGCTTTAACGTTTTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTT 41035 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||| | |||||| Sbjct 41034 TTACCAGTCAAAGTTTTAACGAAAATCTGCAT 41003 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || ||||||||||| || ||||| | | |||||| || ||||||| Sbjct 41665 CAAG-TGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTTCCGTCTTCTA 41607 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || |||||||| || | || || || | | ||||||||||| ||||||| Sbjct 41606 ATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGAA 41547 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| || |||| | | | || || ||||| || ||||||||||| | Sbjct 41546 TTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTAC 41487 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || ||||||| ||||| Sbjct 41486 CAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq11905 Length=336 Score = 127 bits (140), Expect = 5e-24 Identities = 153/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 |||||| || || ||||||||||||||||| ||| || ||||| || ||||| || | Sbjct 110 ATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTG 169 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| ||||||||||| | || || ||||| | | ||| ||||| || ||||| ||| Sbjct 170 CTTT--CCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATT 227 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| | || | |||| || ||| ||||| | ||| || ||||| || Sbjct 228 TTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCG 287 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| |||||||| | ||||| Sbjct 288 GTGAGAGTTTTCACGAAAATTTGCAT 313 >seq9601 Length=294 Score = 125 bits (138), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||||||||||||||| ||| || ||||| || ||||| || || Sbjct 69 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTTCTTCCGTCTTCGAGTTGC 128 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||||||||| | || || ||||| | | ||| ||||| || ||||| |||| Sbjct 129 TTT--CCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATCCCTTCTTTGTCTTGGATTT 186 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||| | || | |||| || ||| ||||| | ||| || ||||| || | Sbjct 187 TAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATCGTTTTTCCGG 246 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| |||||||| | ||||| Sbjct 247 TGAGAGTTTTCACGAAAATTTGCAT 271 >seq4379 Length=409 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | ||| || |||||||| || || ||||||| | |||||| || Sbjct 231 TCGGAGTACCAAATGTAAAGTCGATTCTTTTTGAATATTATAATCGGAGAGAGTTCTTCC 172 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||||| ||| ||||||||||| || | ||||| || | | |||||||| || Sbjct 171 ATCTTCTAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTT 112 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| ||| ||| |||| | | | || || ||||| || ||||| Sbjct 111 ATCTTGAATTTTAGCTTTCACATTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGTAAT 52 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || || | || || ||||||| ||||| Sbjct 51 AGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 16 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 151941 GTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 ||||| |||||||| | ||| || |||||||| || | ||||| || | | ||| Sbjct 407 GTTCTTCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGGGGAATT 348 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| ||||||||||| ||| ||| |||| | | | || || ||||| Sbjct 347 CCTTCCTTATCTTGAATTTTGGCTTTTACATTCTCGATGGTATCGCTTGGTTCGACTTCG 288 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||| || || | || || ||||||| ||||| Sbjct 287 AGCGTAATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 244 >seq12829 Length=36573 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 ||||||| || || ||||| | |||||| | |||||| ||||| ||| ||||| || | Sbjct 35483 CTTTTTGAATATTATAATCTGATAAAGTACGCCCATCCTCTAGCTGTTTTCCGGCAAAAA 35424 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||| || || | | || ||||| || ||||||||||| ||||| ||| | | Sbjct 35423 TCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTATCTTGAATTTTCTGTTTCACATTTT 35364 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||| || ||| || ||||| | ||| || ||||| || ||||| || || || | Sbjct 35363 CTATTGAATCAGAAGGTTCAACTTCCAAAGTTATTGTTTTACCGGTGAGCGTTTTTACAA 35304 Query 152095 AGACCTGCAT 152104 ||| ||||| Sbjct 35303 AGATTTGCAT 35294 >seq11230 Length=416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || ||||| || || ||||| || || ||||| |||||||| | Sbjct 288 ATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTCAACGTTCTGCCATCTTCCAACTG 229 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | || || ||||| | | ||| ||||| || ||||| || || Sbjct 228 TTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTT 169 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | |||| || ||| ||||| | ||| || ||||| || || Sbjct 168 AGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCGTTTTTCCGGT 109 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||| || |||||||| | ||||| Sbjct 108 GAGCGTTTTCACGAAAATTTGCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153630257672519