Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5713 95.1 9e-15 seq12829 93.3 3e-14 seq9555 91.5 1e-13 seq11905 87.8 1e-12 >seq5713 Length=114977 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||||| ||| || ||| || |||||||| || ||||| | ||| | Sbjct 41676 AGTCTCAACACCAAGTGCAGTGTGGATTCTTTTTGGATATTATAATCAGAGAGAGTTCTT 41617 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| || | || || || || ||||| | ||| || ||||||| || | |||||| Sbjct 41616 CCGTCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGGGGAATTCCTTCC 41557 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || | | | | || |||| | |||| | ||||| ||| || ||| || || | ||| Sbjct 41556 TTAT-CTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGCTGGGTTCGACTTCGAGCGT 41498 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || || | || || |||||||||||||| Sbjct 41497 AATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 41459 >seq12829 Length=36573 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 ||| | || || ||||| || |||||||| ||||||||||| ||||||| ||| | ||| Sbjct 35454 CGCCCATCCTCTAGCTGTTTTCCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATCCCT 35395 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 || || || || ||||| |||| || |||| | || | | ||| || |||| Sbjct 35394 TCTTTATCTTGAATTTTCTGTTTCACATTTTCTATTGAATCAGAAGGTTCAACTTCCAAA 35335 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || ||||| || || || ||||||||||| Sbjct 35334 GTTATTGTTTTACCGGTGAGCGTTTTTACAAAGATTTGCAT 35294 >seq9555 Length=64705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGT 44183 ||| |||| |||||| ||| ||||||||||||||||| || | | | || | | Sbjct 30977 CAATACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCACTCAACGTTCTGC-CAT 30919 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | |||| ||| || ||||| |||||||| | || || || | || | ||||| || | Sbjct 30918 CTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCTTTGT 30859 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||| | || | || ||||||| | || || |||| || |||| Sbjct 30858 CTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGACTTCCAAAGTGATCG 30799 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| ||||| || |||||||| |||||||| Sbjct 30798 TTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 30765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGT 44183 || || | |||||| ||| || |||||||||||||| ||| | ||| | ||| Sbjct 29937 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT--CTTCCGT 29880 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | || || || || ||||| |||||||| | || || || | || | |||||| || | Sbjct 29879 CTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGT 29820 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||| | || | || ||||| | | || || |||| || |||| Sbjct 29819 CTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCG 29760 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||| || || ||||||||||| |||||| Sbjct 29759 TTTTTCCCGTAAGAGTTTTCACGAAGATCTGCATG 29725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGT 44183 || || | |||||| ||| || |||||||||||||| ||| | ||| | ||| Sbjct 30165 AATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT--CTTCCGT 30108 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | || || || || ||||| |||||||| | || || || | || | |||||| || | Sbjct 30107 CTTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGT 30048 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||| | || | || ||||| | | || || |||| || |||| Sbjct 30047 CTTGGATCTTAGCCTTGACGTTTTCGATCGTGTCCGACGGCTCGACTTCCAAAGTGATCG 29988 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| || || |||||||| |||||||| Sbjct 29987 TTTTTCCCGTAAGAGTTTTCACGAAAATTTGCAT 29954 >seq11905 Length=336 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGT 44183 ||||||| ||||| ||| || |||||||||||||| ||| | ||| | ||| Sbjct 102 AACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAACGTT--CTTCCGT 159 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | || || ||||| ||||| |||||||| | || || || | || | |||||| || | Sbjct 160 CTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATACCTTCTTTGT 219 Query 44244 CCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | || || |||| | | || | || ||||||| | || || || | || ||| Sbjct 220 CTTGGAT-TTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAACTTCTAAAGTTATC 278 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || |||||||| |||||||| Sbjct 279 GTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359933851020513