Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq6746 132 6e-26 seq908 100 4e-16 >seq6746 Length=106662 Score = 132 bits (146), Expect = 6e-26 Identities = 239/342 (70%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533 ||| ||| | || ||| |||| || || || ||||| ||||||||||| |||| | | Sbjct 4131 AGGGGATCTCGGTCCTATTTATGGATTCCAGTGGAGGCATTTTGGAGCCGAGTACAAAGA 4072 Query 50534 T---TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGAC 50590 | | || || ||||| || |||||||| |||||| ||||||| || |||| | Sbjct 4071 TATGTTCGCCG---ATTACACTGGCCAAGGCGTTGATCAATTGCAAAATATAATAAATAT 4015 Query 50591 GTTGAAAACAAACCCCGACGATCGGCGTAT--TTTAATGACCGCCTGGAATCCAACCGAT 50648 | | ||||| || || ||||| | | || ||| ||| ||||||||||| ||| Sbjct 4014 GATCAAAACCAATCCTAACGATAGAAGAATGATTTTATGT--GCCTGGAATCCTGTTGAT 3957 Query 50649 ATAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAAT 50708 || | ||| | ||||||||||||||| ||| |||||||||| || ||| Sbjct 3956 TTACCTAAAATGGCATTACCTCCGTGTCATTGCTTAGTGCAATTTTATGT---AGCTAAT 3900 Query 50709 GTTT---TATCCTGTCA-ATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTT 50764 | | | || |||| |||| ||||| | || |||||||||||| |||| || ||||| Sbjct 3899 GGTGAGCTTTCGTGTCTCATGT-ATCAACGCTCTGCTGATATGGGTCTAGGTGTACCTTT 3841 Query 50765 CAACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 ||| |||| |||| | || | || ||| |||||||||| Sbjct 3840 CAATATAGCAAGTTACTCCTTGCTCACTTATATGATCGCTCA 3799 >seq908 Length=107432 Score = 100 bits (110), Expect = 4e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 ||||||||| | | || ||||| |||||||| |||||||| | |||| || |||||| Sbjct 56615 AAACAATCGGCGAATATTTGCTTCTGATTCACCGACATATTTATCCAATATTTGAGGACC 56674 Query 156224 GTTAACTATTTTGACGGGTCGTGATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGT 156283 || ||||| ||| ||||| || || || | | || |||||||| ||||| Sbjct 56675 ATTCACTATCTTGGGTTCTCGTGCATTCAACATTTTACCAATTTGACGAGCCATCAATGT 56734 Query 156284 TTTACC-GCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTA 156339 |||||| | |||| ||||||||||| || || | ||||| | |||||||| |||| Sbjct 56735 TTTACCAGTACCC-GGAGGTCCGTACAATAAAATACCTTTAACGTGTTTACATCCTA 56790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666967725846840