Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9555 176 1e-38 seq11905 174 4e-38 seq9601 172 1e-37 seq5713 163 7e-35 seq11483 161 2e-34 seq4379 161 2e-34 seq11230 156 1e-32 seq12829 107 5e-18 seq8209 84.2 5e-11 >seq9555 Length=64705 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||||| || |||||||||||||| | || || || || ||| Sbjct 29957 CAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGGAC 30016 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 30017 ACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAA 30076 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| |||||||| ||||| || | ||| || ||| || Sbjct 30077 AGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATC 30136 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 30137 CAAAAAGAATCCACCCTTCA 30156 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| ||||||||||| || | || || || || ||| Sbjct 30540 CAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGAC 30599 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| || || || ||||||||||| ||||| || ||||| ||| Sbjct 30600 ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAACAA 30659 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || |||||||| ||||| || | ||| || ||| || Sbjct 30660 AGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATC 30719 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 30720 CAAAAAGAATCCACCCTTCA 30739 Score = 167 bits (184), Expect = 6e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || |||||||||||||| | || || || || ||| Sbjct 29729 CAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCGGAC 29788 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 29789 ACGATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAA 29848 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| |||||||| ||||| || | ||| || ||| || Sbjct 29849 AGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATC 29908 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 29909 CAAAAAGAATCCACCCTTCA 29928 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 30768 CAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCGAC 30827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 30828 ACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAACAA 30887 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||||||| | |||||||| || || | || || ||| || Sbjct 30888 AGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAACATC 30947 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 30948 CAAAAGGAATCCACCCTTCA-CTTG 30971 >seq11905 Length=336 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| ||||||||||| || | || || || || ||| Sbjct 310 CAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGAC 251 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| || || || ||||||||||| ||||| || ||||| ||| Sbjct 250 ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAACAA 191 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || |||||||| ||||| || | ||| || ||| || Sbjct 190 AGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATC 131 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| || || ||| | || || Sbjct 130 CAAAAAGAATCCACCCTTCATTTGGTGTT 102 >seq9601 Length=294 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| ||||||||||| || | || || || || ||| Sbjct 268 CAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGAC 209 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| || || || ||||||||||| ||||| || ||||| ||| Sbjct 208 ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAACAA 149 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || |||||||| ||||| || | ||| || ||| || Sbjct 148 AGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATC 89 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 88 CAAAAAGAATCCACCCTTCA 69 >seq5713 Length=114977 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| || || ||||| || ||| | || Sbjct 41462 CAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCGAT 41521 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || ||||| || || |||||||| || || || || ||| Sbjct 41522 ACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAACAA 41581 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||| | ||||| ||||| ||||| | |||||||| || Sbjct 41582 CGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAATATC 41641 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| |||||||| | || |||||||| Sbjct 41642 CAAAAAGAATCCACACTGCACTTGGTGTTGAGACT 41676 Score = 161 bits (178), Expect = 2e-34 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| || || ||||| || ||| | || Sbjct 41234 CAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCGAT 41293 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 41294 ACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAGCAA 41353 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| || ||||||||||| ||||| |||||||||| | Sbjct 41354 CGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATATT 41413 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 41414 CAAAAAGAATCGAC 41427 Score = 156 bits (172), Expect = 1e-32 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || || ||||| || || ||||| || ||| | || Sbjct 41006 CAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCGAT 41065 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| || ||||| || ||||| ||||| || || || |||||| Sbjct 41066 ACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAGCAA 41125 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| || ||||||||||| ||||| |||||||||| || Sbjct 41126 CGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATATC 41185 Query 178104 CAAAAAGAATCAAC 178117 ||||| ||||| || Sbjct 41186 CAAAAGGAATCGAC 41199 Score = 154 bits (170), Expect = 4e-32 Identities = 159/206 (77%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| |||||| | || || ||||| ||||| ||||| || ||| Sbjct 40772 AAAATGC---AGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAA 40828 Query 177975 ---AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 ||| || ||||||||||| || ||| || ||||| || || |||||||| || Sbjct 40829 CCAAGC---GATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCC 40885 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || || |||||||| || |||||||| || ||||| | ||||||||||| |||||| || Sbjct 40886 CCAGATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCC 40945 Query 178092 GATTATAACGTCCAAAAAGAATCAAC 178117 ||||| || ||||||||||||| || Sbjct 40946 GATTACAATATCCAAAAAGAATCGAC 40971 >seq11483 Length=76730 Score = 161 bits (178), Expect = 2e-34 Identities = 150/188 (80%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| || |||||||| || ||| || ||| Sbjct 50851 CAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAACCTTCCGAC 50910 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| |||||||| ||||||||||| || ||||| || || ||||| ||||| Sbjct 50911 TCGATTGAGAATGTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAGCAG 50970 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| |||||||| | ||||||||||| || |||| | || |||||| | Sbjct 50971 AGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAAC-CTTGTCGGACTATAACAT 51029 Query 178103 CCAAAAAG 178110 ||||||| Sbjct 51030 TCAAAAAG 51037 >seq4379 Length=409 Score = 161 bits (178), Expect = 2e-34 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| || || ||||| || ||| | || Sbjct 19 CAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGCGAT 78 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 79 ACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAGCAA 138 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| || ||||||||||| ||||| |||||||||| | Sbjct 139 CGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAATATT 198 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 199 CAAAAAGAATCGAC 212 Score = 113 bits (124), Expect = 1e-19 Identities = 124/164 (76%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| ||||| | || || ||||| || || ||||| || ||| ||| Sbjct 247 CAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCAAGC--- 303 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||||||||| || ||| || ||||| || || |||||||| || || || ||| Sbjct 304 GATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 363 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 ||||| || |||||||| || ||||| | ||||||||||| || Sbjct 364 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAAC 407 >seq11230 Length=416 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 88 CAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCCGAC 147 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 148 ACAATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCAACAA 207 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||||||| | |||||||| || || | || || || | Sbjct 208 AGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAATATT 267 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || |||||||| || || ||| | || || Sbjct 268 CAGAAAGAATCCACCCTTCATTTGGTGTT 296 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| ||||||||||| || | || || || || ||| Sbjct 316 CAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCCGAC 375 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| ||||||||| || || || ||||||||||| Sbjct 376 ACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGG 416 >seq12829 Length=36573 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| || ||||| || || | || || ||| || || Sbjct 35297 CAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCTGAT 35356 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || ||||| || ||||| || |||||||| || ||||| || || || Sbjct 35357 TCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAACAG 35416 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || |||||||||||||| || ||||| | ||| | | |||||||| | Sbjct 35417 CGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAATATT 35476 Query 178104 CAAAAAG 178110 ||||||| Sbjct 35477 CAAAAAG 35483 >seq8209 Length=47891 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || || || |||||||| || | || ||||| || |||||||| ||||||||| | Sbjct 18987 AGGCATTCCCCCTGACCAGCAGCGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGACG 19046 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 || ||| | || || || |||||||||||||||| ||||| | || || Sbjct 19047 TACCCTTTCTGACTACAATATCCAAAAAGAATCAACTTTGCATTTGGTCTT 19097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203532415453466