Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq11905 102 8e-17 seq5713 96.9 3e-15 seq11230 89.7 5e-13 seq9601 87.8 2e-12 seq9555 87.8 2e-12 >seq11905 Length=336 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||||||||||| ||| || ||| || || || ||||| |||||| Sbjct 87 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 146 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| ||||| ||||| |||||||| |||| | |||||||| | || Sbjct 147 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 206 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | || |||| |||| ||| | | |||||| || ||| || Sbjct 207 ATACCTTCTTTGT-CTTGGATTTTAGCTTTGACGTTTTCGATTGTGTCGGACGGCTCAAC 265 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||||||||| || || || || || |||||||| ||||| Sbjct 266 TTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 313 >seq5713 Length=114977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || || ||||| |||||||| || | | || || || || ||||||||||| Sbjct 41193 TCCTTTTGGATATTATAATCGGAGAGAGTTCTTCCATCTTCTAGTTGTTTGCCGGCGAAG 41134 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || || || || || | ||||| | ||| || | | ||| |||| |||| |||| Sbjct 41133 ATGAGACGTTGCTGATCTGGGGGAATTCCCTCTTTAT-CTTGAATTTTGGCTTTAACGTT 41075 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || ||||| | || || || | ||| || |||||||| |||| || || || Sbjct 41074 TTCAATGGTATCGCTGGGTTCGACTTCGAGCGTAATAGTTTTACCAGTCAAAGTTTTAAC 41015 Query 41851 GAAAATCTGCAT 41862 |||||||||||| Sbjct 41014 GAAAATCTGCAT 41003 >seq11230 Length=416 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||||||||||| ||| || ||| || |||||||| || ||||| Sbjct 311 CCACCACGTAGACGTAACACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAGTCACTC 252 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || | ||| || |||||||| |||| | |||||||| | || Sbjct 251 AACGTTCTGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 192 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | || | || || | ||| | | |||||| || ||| || Sbjct 191 ATGCCTTCTTTGT-CTTGGATCTTAGCCTTGACGTTTTCGATTGTGTCGGACGGCTCGAC 133 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || |||||||| || || ||||| || |||||||| ||||| Sbjct 132 TTCCAAAGTGATCGTTTTTCCGGTGAGCGTTTTCACGAAAATTTGCAT 85 >seq9601 Length=294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||||||| || | || || ||| || || || ||||| |||||| Sbjct 45 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 104 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 | || | |||| ||||| ||||| |||||||| |||| | |||||||| | ||| Sbjct 105 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 164 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || || ||||| |||||| |||| ||| | | |||||| || ||| | Sbjct 165 ATCCCT-TCTTTGTCTTGGATTTTA-GCTTTGACGTTTTCGATTGTGTCGGACGGCTCAA 222 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||||||||||| || || || || || |||||||| ||||| Sbjct 223 CTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 271 >seq9555 Length=64705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||||||| || | || || ||| || || || ||||| |||||| Sbjct 30763 CCACCACGAAGACGTAATACTAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 30704 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 | || | |||| ||||| ||||| |||||||| |||| | |||||||| | ||| Sbjct 30703 AACGTTCTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 30644 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || || ||||| |||||| |||| ||| | | |||||| || ||| | Sbjct 30643 ATCCCT-TCTTTGTCTTGGATTTTA-GCTTTGACGTTTTCGATTGTGTCGGACGGCTCAA 30586 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||||||||||| || || || || || |||||||| ||||| Sbjct 30585 CTTCTAAAGTTATCGTTTTTCCGGTGAGAGTTTTCACGAAAATTTGCAT 30537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462229517046800