Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1868 105 1e-17 seq11508 93.3 6e-14 seq8001 84.2 3e-11 >seq1868 Length=114019 Score = 105 bits (116), Expect = 1e-17 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 202762 ATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCT 202821 ||||||||| || |||||| | ||| |||| |||| ||| || ||||| || || Sbjct 69414 ATCAAATTTTCGCGCACATCCCGCGTAATTCATGTATCGAATCTTGCCAAAAATCTCTCG 69473 Query 202822 TTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATT 202881 || ||||| | | || || || ||||||||||||||||| || || || |||||||| Sbjct 69474 CTCCTTCCAGCCCATGTCGTGGATGCCACAAATTGACCACATGCAGCCTACGTATCCATT 69533 Query 202882 TGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTC 202941 |||||| | ||||| ||| || || || || | | || || || Sbjct 69534 TGGATCCCTGCCATCCATACTGTACTTGTCGTTGAGGTAAATTGCCGTTGCCAAGGCCTC 69593 Query 202942 TTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATG 203001 || || | ||||| ||| || | |||||||| ||||||||||| | | | || || Sbjct 69594 CTCGGGAGTTTTTGACCACTCGAGAATTTTTTTCGCCCAATACATGCGCATGAAACCGTG 69653 Query 203002 CATTTTACC 203010 |||||| || Sbjct 69654 CATTTTGCC 69662 >seq11508 Length=54009 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| || || || || ||||| || || | ||| | || || Sbjct 27610 AATGCAAATCTTTGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTCGAGGCCTC 27551 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || ||||||||||| ||||| || || ||||| ||||| Sbjct 27550 GGATACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCGGATCA 27491 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || ||||| || || ||||| | |||||| |||| || | || || || Sbjct 27490 ACAGCGACTAATTTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTCTCCGACTACAA 27431 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | ||| | ||| | ||| | || || || || Sbjct 27430 CATCCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGTCTGCGTGGAGGCAT 27380 >seq8001 Length=75750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/270 (67%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 ||||||||||| | || ||| | |||||| ||||| | || |||| ||||| Sbjct 28350 TTTAAATTAGTGATATTTGCCAGCATATACGTCAAAAGTGCGTACGAGGCAATGTTAAAG 28291 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 || || || | |||||||| || ||| || |||| ||||| | ||| | |||| Sbjct 28290 GGAACTCCAAGGCCCATATCTGCACTTCTCTGGTACAGATGACAGGAAAGCTC---ATTA 28234 Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCT 205614 ||| || |||||| || | || ||||| ||||||| | |||| || || ||| Sbjct 28233 TTAGCCACGAAAAATTGGACCAGGCAGTGACAGGGTGGTAAAGCCATTTTAGGAATGTCT 28174 Query 205615 ATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattt 205674 | ||||||||||| | | ||||| || | || || || ||| |||||||| Sbjct 28173 GTGGGATTCCAGGCGGACATGATTATCCGTCGATCATCCGGATTGTTTCGTATTTTATCA 28114 Query 205675 atAATATGTGTTAATTGATCAAATCCTTGA 205704 |||| | | | |||||||| |||||| Sbjct 28113 ATAACCTCGGCAAGTTGATCAATACCTTGA 28084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755342152780800