Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1005 100 3e-16 seq11508 98.7 1e-15 >seq1005 Length=228466 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| ||||| || | || ||||| || |||||||| || || Sbjct 171740 GCCTCCACGCAGACGCAAGACTAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 171681 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||||||||| ||| |||||| || ||||| || ||||| Sbjct 171680 CAGGGTGCGGCCATCCTCCAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGAGG 171621 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| || | | ||| | ||||||| || ||| || Sbjct 171620 AATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGAC 171561 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || || |||| ||||| || || || ||||| Sbjct 171560 CTCGAGAGTGATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171513 >seq11508 Length=54009 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||| | || || || || || || || ||||| | Sbjct 26927 CCTCCTCGCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGAC 26986 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| ||||||||||||||||| |||| || || ||||| || || || Sbjct 26987 AACGTGCGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 27046 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 27047 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCGACC 27106 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||| ||||| |||||||| Sbjct 27107 TCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATTTGCAT 27153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | || | || | || ||||||||||| ||||| || || | Sbjct 27155 CCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCGAC 27214 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| |||||||| || || || | ||||| || ||||| || || || Sbjct 27215 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTGGG 27274 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || |||| | || | ||||| | || ||| ||| Sbjct 27275 ATGCCCTCTTTGTCCTGGATCTTCGCCTTTACGTTCTCGATCGTGTCAGAGGCCTCAACC 27334 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||| ||||| || ||||| Sbjct 27335 TCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAAATCTGCAT 27381 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | || | || | || ||||||||||| ||||| || || | Sbjct 27611 CCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCGAC 27670 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| |||||||| || || || | ||||| || ||||| || || || Sbjct 27671 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTGGG 27730 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | |||||||| | ||| || Sbjct 27731 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCGATTGTGTCGGAAGCCTCAACT 27790 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | ||||| || || || ||||| Sbjct 27791 TCCAGAGTGATGGTCTTGCCCGTGAGGGTTTTGACAAAGATCTGCAT 27837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | || | || ||||| || || ||||| || ||| Sbjct 27382 GCCTCCACGCAGACGGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27441 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||||||||| | || || || || ||||| || || Sbjct 27442 GAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAAATTAGTCGCTGTTGATCCGGTGG 27501 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| |||||||| ||| |||| | || | | ||| | || || | || ||| | Sbjct 27502 GATGCCCTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCGATCGTATCCGAGGCCTCGA 27560 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || || || || | |||||||| || |||||||| Sbjct 27561 CCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACAAAGATTTGCAT 27609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495989243155200