Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2569 113 3e-20 seq11508 104 2e-17 seq1005 98.7 8e-16 >seq2569 Length=108685 Score = 113 bits (124), Expect = 3e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| ||||||||||| ||| | || |||| ||||| || || |||||||||||||| Sbjct 43085 TTGTAGTCGGACAATGTGCGTCCATCCTCCAGCTGTTTTCCAGCGAAAATCAATCGCTGC 43144 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | || ||||| || |||| | ||||| | | | ||||| Sbjct 43145 TGATCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCT 43204 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||||||| || | || || || || || ||||||||||||||||| ||||||||| Sbjct 43205 GAAGCCTCGACCTCGAGGGTGATGGTCTTACCCGTTAGAGTTTTCACAAAGATTTGCATT 43264 >seq11508 Length=54009 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| |||||| || | ||||| ||||| | || || |||| || Sbjct 27857 ACCAAATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 27916 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || || |||||||| |||| |||||||||||| | || | ||||| || || | Sbjct 27917 AGCTGCTTTCCGGCAAAGATCAGTCGCTGTTGATCCGGTGGGATGCCTTCCTTGTCCTGG 27976 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | ||| ||||| |||||||| || | || || || || Sbjct 27977 ATCTTTGCCTTGACGTTCTCAATCGTGTCCGACGCCTCGACCTCAAGGGTGATGGTCTTC 28036 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| ||||||||||| ||||| |||||| Sbjct 28037 CCGGTGAGAGTTTTCACGAAAATCTGCATT 28066 >seq1005 Length=228466 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | || |||||||| | || |||||| || | ||||| || ||| Sbjct 172195 CCTCCACGCAGACGCAAGACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAC 172136 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | |||||| || ||||| ||||||||||| || || | || Sbjct 172135 AGGGTGCGGCCATCTTCGAGTTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGTGGG 172076 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | ||||| | ||| |||||| |||||||| Sbjct 172075 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGACC 172016 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 172015 TCGAGAGTAATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171969 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | || || ||||| | || |||||| || | ||||| || || Sbjct 171740 GCCTCCACGCAGACGCAAGACTAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 171681 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| ||||| || ||||| ||||||||||| || || | || Sbjct 171680 CAGGGTGCGGCCATCCTCCAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGAGG 171621 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| | ||||| | ||| |||||| |||||||| Sbjct 171620 AATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGAC 171561 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 171560 CTCGAGAGTGATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171513 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | || | ||||| || |||||| || | ||||| ||||| Sbjct 171968 GCCTCCACGCAGACGAAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 171909 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| || | || || || || ||||||||||||||||| || | || Sbjct 171908 CAGGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCTGGGGG 171849 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || ||| || | ||||| | ||| ||||| |||||| | Sbjct 171848 AATTCCCTCCTTGTC-CTGAATTTTAGCCTTGACGTTCTCAATGCTGTCGGAAGCCTCAA 171790 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || |||||||| || || || || || ||||||||||| Sbjct 171789 CTTCCAACGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATTTGCAT 171741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | || | ||||| || |||||| || | ||||| ||||| Sbjct 171512 GCCTCCACGCAGACGCAGGACGAGATGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 171453 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || || | || || ||||| |||||||||||||| || || | || Sbjct 171452 CAGGGTACGCCCATCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGGGG 171393 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || ||| || | ||||| | ||| ||||| |||||| | Sbjct 171392 AATGCCCTCCTTGTC-CTGAATTTTAGCCTTGACGTTCTCAATGCTGTCGGAAGCCTCAA 171334 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || || || || ||||| ||||| ||||| || ||||| || Sbjct 171333 CTTCCAAGGTAATGGTCTTACCAGTTAGTGTTTTAACAAAGATCTGCATGTT 171282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381313564411248