Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1005 93.3 4e-14 seq11508 89.7 5e-13 seq2109 89.7 5e-13 >seq1005 Length=228466 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || || || || || |||||||| || || |||| |||||| Sbjct 172405 ACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCTTCG 172346 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||||||||| ||| |||||| || ||||| || || || ||||| || ||||| Sbjct 172345 AGTTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 172286 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || | |||| | || || ||||| | || | |||||| Sbjct 172285 ATCTTAGCCTTGACGTTCTCGATGCTGTCAGAGGCCTCAACTTCCAAGGTAATGGTCTTG 172226 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||||||| || || |||||||| Sbjct 172225 CCAGTCAATGTTTTAACAAAAATTTGCAT 172197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || ||||| | || || || || || |||||||| || | Sbjct 172195 CCTCCACGCAGACGCAAGACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAC 172136 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||||||||||| ||| |||||| || ||||| || || || Sbjct 172135 AGGGTGCGGCCATCTTCGAGTTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGTGGG 172076 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||| || | | ||| | ||||| | || || || Sbjct 172075 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGACC 172016 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || |||| ||||| || || || ||||| Sbjct 172015 TCGAGAGTAATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171969 >seq11508 Length=54009 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || || || | || ||||| || || || |||||||| | Sbjct 26927 CCTCCTCGCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGAC 26986 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| ||||||||||| |||| || || ||||| || || || Sbjct 26987 AACGTGCGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 27046 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| || || || | | || | |||||| | || || || Sbjct 27047 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCGACC 27106 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||||| ||||| |||||||| Sbjct 27107 TCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATTTGCAT 27153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| | ||| | || || || || || |||||||| ||| Sbjct 27382 GCCTCCACGCAGACGGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27441 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || ||||| ||||||||||| | || || || || ||||| || || Sbjct 27442 GAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAAAATTAGTCGCTGTTGATCCGGTGG 27501 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| |||||| || | | ||| | ||| |||| || || || Sbjct 27502 GATGCCCTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTATCCGAGGCCTCGAC 27561 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | |||||||| || |||||||| Sbjct 27562 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACAAAGATTTGCAT 27609 >seq2109 Length=239337 Score = 89.7 bits (98), Expect = 5e-13 Identities = 170/252 (67%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 ||||| ||||| | | ||| ||||| || || || ||||| |||||||||||||| Sbjct 131218 ACGGTGAATTGAAGTGCATTAGCCGCAGGTTTTGATCGTAAATAATACATGCCGGTTTTA 131159 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTTGCC 156262 || || | | ||| |||| | |||| ||| | || || | ||||| | |||| Sbjct 131158 AGACCAAGATCCCATGCGTAAAAATGCATCGATGTCAACTTGCTCGTTGTAGGTTGTGCC 131099 Query 156263 ATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTCA 156322 |||| || || | ||| ||| || || ||||| ||||| | || |||||||||| Sbjct 131098 ATGTGAACATTCAGCGACTGAGACTGGTCAATAAAGGCTCCACGATCAGCTGCCATTTTT 131039 Query 156323 ATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAGA 156382 | ||| |||| | | |||||||||| | || |||||| || ||| | Sbjct 131038 AGAATAGTTTTT---------TGCGAAATTTCCCAAACAGTTTTGTACAACTCTTTGATT 130988 Query 156383 TTGTCGGGAATT 156394 | |||||||||| Sbjct 130987 TCGTCGGGAATT 130976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506937992929920