Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11508 102 7e-17 seq1005 89.7 4e-13 seq2569 82.4 6e-11 >seq11508 Length=54009 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||||||| | | |||| || | || ||||| ||||| || ||||| |||| Sbjct 27153 TTCCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 27212 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| || ||||||| ||||| || || || |||| |||| |||||| || | Sbjct 27213 ACAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTG 27272 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| || ||| ||||| | ||| || || | ||| Sbjct 27273 GGATGCCCTCTTTGTCCTGGATCTTCGCCTTTACGTTCTCGATCGTGTCAGAGGCCTCAA 27332 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||||||||| || | |||||||| ||||| ||||| Sbjct 27333 CCTCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAAATCTGCAT 27381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || ||||| || | | || | ||||| ||||||||||| Sbjct 27413 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCGAGCTGTTTACCA 27472 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| |||| ||| |||||| || | |||||||||||| |||||| || Sbjct 27473 GCGAAAATTAGTCGCTGTTGATCCGGTGGGATGCCCTCTTTGTCTTGAATTTTGGCCTTG 27532 Query 18965 ACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| ||||| | ||| ||| |||| ||| ||||||||||| || | || Sbjct 27533 ACATTTTCGATCGTATC-CGAGGCCTCGACCTCGAGGGTGATGGTTTTACCCGTGAGGGT 27591 Query 19024 TTTGACAAAAATTTGCATT 19042 ||| ||||| ||||||||| Sbjct 27592 TTTTACAAAGATTTGCATT 27610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||||| | | |||| ||| | || || ||||| || ||||||||||| | | Sbjct 26927 CCTCCTCGCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGAC 26986 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||| ||||||||||| || | || |||| |||||| || || Sbjct 26987 AACGTGCGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 27046 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| || ||| || || | ||| || || | ||| Sbjct 27047 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCGACC 27106 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||||||||| || | |||||||| || ||||||||| Sbjct 27107 TCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATTTGCATT 27154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||||||| | | |||| || | || ||||| ||||| || ||||| |||| Sbjct 27609 TTCCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 27668 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| || ||||||| ||||| || || || |||| |||| |||||| || | Sbjct 27669 ACAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTG 27728 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| || || ||| || | ||| || ||| || ||| Sbjct 27729 GGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCGATTGTGTCGGAAGCCTCAA 27788 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || ||||| || || || | ||||||||||| || |||||| Sbjct 27789 CTTCCAGAGTGATGGTCTTGCCCGTGAGGGTTTTGACAAAGATCTGCATT 27838 >seq1005 Length=228466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || || | |||| || |||||||| ||||| ||||| || | | Sbjct 171739 CCTCCACGCAGACGCAAGACTAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAC 171680 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||||||||||||| | || | || |||||| || || Sbjct 171679 AGGGTGCGGCCATCCTCCAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGAGGA 171620 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| || || | | | ||| ||| | ||| Sbjct 171619 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGACC 171560 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || || |||||||| || | |||||||||||| || ||||| Sbjct 171559 TCGAGAGTGATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| | || |||| |||| || |||||||| ||||| ||||| || | Sbjct 172197 TTCCTCCACGCAGACGCAAGACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAG 172138 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || | | || || || |||||||||||| | || | || |||||| || | Sbjct 172137 ACAGGGTGCGGCCATCTTCGAGTTGTTTACCCGCAAAGATCAATCGCTGCTGGTCTGGTG 172078 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| || || | | | ||| ||| | ||| Sbjct 172077 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAGTGTCGGAGGCCTCGA 172018 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||||| |||||||| || | |||||||||||| || ||||| Sbjct 172017 CCTCGAGAGTAATTGTTTTACCAGTCAGAGTTTTGACAAAGATCTGCAT 171969 >seq2569 Length=108685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 18852 CCTTT-TGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAA 18910 ||||| || || ||||| || | || ||| | |||||||||||||| || || || Sbjct 43073 CCTTTCTGGATGTTGTAGTCGGACAATGTGCGTCCATCCTCCAGCTGTTTTCCAGCGAAA 43132 Query 18911 ATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGG 18970 || | || ||||||||| ||| | ||||||||||| || || || || | Sbjct 43133 ATCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTT 43192 Query 18971 CCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACA 19030 ||| || || || ||| |||| ||| ||||| ||||| |||| |||||| ||| Sbjct 43193 TCGATGGTGTCTGAAGCCTCGACCTCGAGGGTGATGGTCTTACCCGTTAGAGTTTTCACA 43252 Query 19031 AAAATTTGCATT 19042 || ||||||||| Sbjct 43253 AAGATTTGCATT 43264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414511885782064