Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11508 145 2e-29 seq1868 145 2e-29 seq2569 129 1e-24 seq1005 120 7e-22 seq1257 96.9 8e-15 >seq11508 Length=54009 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || ||||| | ||| || Sbjct 27398 AGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCC 27457 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| |||||||| | ||||||||| || || || || ||||| || Sbjct 27458 TCGAGCTGTTTACCAGCGAAAATTAGTCGCTGTTGATCCGGTGGGATGCCCTCTTTGTCT 27517 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 ||||| || || || |||||||| | ||||| | ||| || ||||| || || || || Sbjct 27518 TGAATTTTGGCCTTGACATTTTCGATCGTATC-CGAGGCCTCGACCTCGAGGGTGATGGT 27576 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || ||||||||||| || |||||| Sbjct 27577 TTTACCCGTGAGGGTTTTTACAAAGATTTGCATT 27610 >seq1868 Length=114019 Score = 145 bits (160), Expect = 2e-29 Identities = 234/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 238566 GAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTA 238625 |||| ||| | || ||||| || ||||| | || |||| || |||| || | Sbjct 69722 GAGAAAGCTCACACGCACGAGGATCTCTGGAACGCGGCGCAGAACCAGCTGGTGCGAGAA 69663 Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGA 238685 ||||||||||| ||||| | || ||||||||||| ||||| || || || ||| | | | Sbjct 69662 GGCAAAATGCACGGTTTCATGCGCATGTATTGGGCGAAAAAAATTCTCGAGTGGTCAAAA 69603 Query 238686 TCTCCAAAGGAAGCTCTTAGATATAGTA-TTTATCTGAACGATAAATACGAACTCGACGG 238744 |||| |||| || ||| | | | | |||| || ||||| || ||| | || || Sbjct 69602 ACTCCCGAGGAGGC-CTTGGCAACGGCAATTTACCTCAACGACAAGTACAGTATGGATGG 69544 Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804 | |||||| || ||||||||||| || ||||||||||| ||||| | ||||| | || Sbjct 69543 CAGGGATCCAAATGGATACGTAGGCTGCATGTGGTCAATTTGTGGCATCCACGACATGGG 69484 Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAA 238864 ||| ||| || || ||||| || || ||||||||||||| | ||| | | Sbjct 69483 CTGGAAGGAGCGAGAGATTTTTGGCAAGATTCGATACATGAATTACGCGGGATGTGCGCG 69424 Query 238865 AAAATTTGATGTAAATGCTTTTATCAGTAAATAC 238898 |||||||||| | || || ||| ||| || ||| Sbjct 69423 AAAATTTGATATCAAAGCCTTTGTCAAAAAGTAC 69390 >seq2569 Length=108685 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||| || | || | || || || || ||||||||||| |||| Sbjct 43074 CTTTCTGGATGTTGTAGTCGGACAATGTGCGTCCATCCTCCAGCTGTTTTCCAGCGAAAA 43133 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | ||| ||||| || || ||||| ||||| ||||| ||||| || || ||||||| Sbjct 43134 TCAATCGCTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTT 43193 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||| || || || ||||| || || || |||||||| || || ||||| |||| Sbjct 43194 CGATGGTGTCTGAAGCCTCGACCTCGAGGGTGATGGTCTTACCCGTTAGAGTTTTCACAA 43253 Query 104550 ATATCTGCATTTTG 104563 | || |||||| || Sbjct 43254 AGATTTGCATTGTG 43267 >seq1005 Length=228466 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| || || ||||| || || ||||| || || || | || || Sbjct 171496 AGGACGAGATGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGCCCATCC 171437 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || ||||| | | ||| || || || || || || || || ||| Sbjct 171436 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 171377 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || || || | | | ||| || || || || | ||||| ||| Sbjct 171376 TGAATTTTAGCCTTGACGTTCTCAATGCTGTCGGAAGCCTCAACTTCCAAGGTAATGGTC 171317 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| |||||||| ||||| |||||||| ||| Sbjct 171316 TTACCAGTTAGTGTTTTAACAAAGATCTGCATGTTG 171281 >seq1257 Length=117934 Score = 96.9 bits (106), Expect = 8e-15 Identities = 300/457 (66%), Gaps = 12/457 (3%) Strand=Plus/Plus Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 ||||||||| || |||| ||| || ||||| || || | || || |||||||| | Sbjct 89145 GGAAAAATTACAACCCAGT-GAACGACACTTTATCTCACATGTACTGGCATTTTTTGCCG 89203 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 ||||||||| || ||||||||||| || || ||| | |||||||| ||| | Sbjct 89204 CCTCTGATGGTATAGTCAACGAAAATCTCGTCGAACGATTCAGCCAAGAGGTGCAGGTGA 89263 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | | ||| |||||||| || | || || || ||| | || || || |||| Sbjct 89264 CCGAAGCTCGCTTTTTCTACGGATTTCAAGTTGCAATTGAGAATGTACACTCGGAAATGT 89323 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGA-AAAGACTATTTTCT 269050 || || ||||| || || || || | ||| | | | || | || ||| | Sbjct 89324 ACTCCCTCTTAATTGACACATACATCAAGGAT-CCTTCAGAGCGAGATTTTCTGTTTAAT 89382 Query 269051 TCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || || ||| || || || || || | | |||||| |||| ||||| || Sbjct 89383 GCCATCGAAAAC-CTGCCGTGCGTTGCCAAGAAGGCCAATTGGGCTTTGAACTGGATCAA 89441 Query 269110 C-----GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATA 269164 | || | || | || | ||| || | || || ||||| || || ||||| || Sbjct 89442 CGACGAGAAATCGAGTTTTGCCGAGCGAG--TTGTGGCCTTTGCTGCGGTCGAAGGAATT 89499 Query 269165 TTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA 269224 |||||| || || ||||| || || ||| |||| ||| | || || ||||| || Sbjct 89500 TTCTTTAGTGGCAGCTTCGCCGCCATTTTCTGGCTGAAAAAACGTGGACTCATGCCCGGT 89559 Query 269225 TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 || || ||| ||||| | ||| ||| ||||||| Sbjct 89560 TTGACCTTCAGCAACGAGCTCATATCCAGAGACGAAG 89596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151220546367648