Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006638.1 Length=15230 Score E Sequences producing significant alignments: (Bits) Value seq9109 113 4e-21 seq7574 113 4e-21 seq7744 104 2e-18 seq6273 82.4 7e-12 seq11309 80.6 3e-11 >seq9109 Length=10878 Score = 113 bits (124), Expect = 4e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 12740 ATTTTAACCCTTTAACGCTTCTGGGCGTTTCCCCCACTCTTGGTGGAACG---CCTTCTA 12796 || ||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct 10382 ATATTAACCCTTTAACGCTTGTGGGCTTTTCCCCCACTTTTGGTGGACCGCCTCCTTCTA 10441 Query 12797 CATTTACTTTACACCCTCCCCACTCCGG 12824 ||||||| |||||| ||||||||||||| Sbjct 10442 CATTTACCTTACACGCTCCCCACTCCGG 10469 >seq7574 Length=4130 Score = 113 bits (124), Expect = 4e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 12740 ATTTTAACCCTTTAACGCTTCTGGGCGTTTCCCCCACTCTTGGTGGAACG---CCTTCTA 12796 || ||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct 514 ATATTAACCCTTTAACGCTTGTGGGCTTTTCCCCCACTTTTGGTGGACCGCCTCCTTCTA 455 Query 12797 CATTTACTTTACACCCTCCCCACTCCGG 12824 ||||||| |||||| ||||||||||||| Sbjct 454 CATTTACCTTACACGCTCCCCACTCCGG 427 >seq7744 Length=16608 Score = 104 bits (114), Expect = 2e-18 Identities = 169/249 (68%), Gaps = 21/249 (8%) Strand=Plus/Minus Query 9201 AGAATAGGTTGTATGTCAGTATTCCAACCACGTTGGAGTCCGTGCTCTAAAACAAAATTT 9260 ||||||||||| |||||||| |||||| ||||| | ||| || | | |||| ||| Sbjct 16118 AGAATAGGTTGCATGTCAGTGTTCCAATGACGTTTAACTCCTTGGCCAATAACATAATCG 16059 Query 9261 AACAGTACTGTACACGCATGATCATCTAATTCTGGCCTAGCATTAGATCCAACATTATCA 9320 | ||| |||| || || || |||| ||||| ||||| |||| | | | Sbjct 16058 ATCAGGACTGCGCATGCGTGTTCATGTAATTTGGGCCTTCCATTGGGTTC---------- 16009 Query 9321 GAAGCCTGCGCTCTCTCAGTAATTGATAAACAAACACTCAGTGCTTTTCTGTTGAATACT 9380 | | ||||| || ||| ||| ||||||| || ||||| ||||| | Sbjct 16008 -----------TTTTTCAGTCATCGATGCACATACACTCAAAGCGTTTCTCTTGAACAAC 15960 Query 9381 GCTAATAATAATCGTCGTGCTAATGATTTGCAATCTTTTGATACTTGCTGACAGTATTTG 9440 || ||| | ||| || ||||||||| |||||||| ||||||||||| || || ||| Sbjct 15959 TCTCTTAAGATTCGCCGCGCTAATGATGGGCAATCTTCTGATACTTGCTCCCAATACTTG 15900 Query 9441 AGGTCTCCG 9449 || |||||| Sbjct 15899 AGCTCTCCG 15891 >seq6273 Length=7777 Score = 82.4 bits (90), Expect = 7e-12 Identities = 160/242 (66%), Gaps = 21/242 (9%) Strand=Plus/Minus Query 9208 GTTGTATGTCAGTATTCCAACCACGTTGGAGTCCGTGCTCTAAAACAAAATTTAACAGTA 9267 |||| |||||||| |||||| ||||| | ||| | | | |||| ||| | ||| | Sbjct 3726 GTTGCATGTCAGTGTTCCAATGACGTTTAACTCCTTCGCCAATAACATAATCGATCAGGA 3667 Query 9268 CTGTACACGCATGATCATCTAATTCTGGCCTAGCATTAGATCCAACATTATCAGAAGCCT 9327 ||| || || || |||| ||||| ||||| |||| | | | Sbjct 3666 CTGCGCATGCGTGTTCATGTAATTTGGGCCTTCCATTGGGTTC----------------- 3624 Query 9328 GCGCTCTCTCAGTAATTGATAAACAAACACTCAGTGCTTTTCTGTTGAATACTGCTAATA 9387 | | ||||| || ||| ||| | ||||| || ||||| ||||| | || || Sbjct 3623 ----TTTTTCAGTCATCGATGCACATAAACTCAAAGCGTTTCTCTTGAACAACTCTCTTA 3568 Query 9388 ATAATCGTCGTGCTAATGATTTGCAATCTTTTGATACTTGCTGACAGTATTTGAGGTCTC 9447 | | ||| || ||||||||| |||||||| ||||||||||| || || ||||| |||| Sbjct 3567 AGATTCGCCGCGCTAATGATGGGCAATCTTCTGATACTTGCTCCCAATACTTGAGCTCTC 3508 Query 9448 CG 9449 || Sbjct 3507 CG 3506 Score = 80.6 bits (88), Expect = 3e-11 Identities = 122/173 (71%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 9386 TAATAATCGTCGTGCTAATGATTTGCAATCTTTTGATACTTGCTGACAGTATTTGAGGTC 9445 ||| | ||| || ||||||||| |||||||| ||||||||||| || || ||||| || Sbjct 3469 TAAGATTCGCCGCGCTAATGATGGGCAATCTTCTGATACTTGCTCCCAATACTTGAGCTC 3410 Query 9446 TCCGTAGCTGACCCAAACACCCCTTTGAGGCCTAAGTTCTATGAGACCTGGCAGATTAGT 9505 |||| | | | ||| | | | |||| ||||||| |||| || ||| ||| Sbjct 3409 TCCGAATTTTATATAAATGCGGGTATAAGGCACAAGTTCTTTGAGCCCAGGCTTATTTTC 3350 Query 9506 CCGATACTTCAATGTCCATTTTGTATCATG--AGGATCATATTCCGGTGGTAG 9556 || ||||| ||||| |||||| | ||||||||| || |||||||| Sbjct 3349 TTCATGCTTCAGAATCCATGATGTATCGCGGCAGGATCATACTCTGGTGGTAG 3297 >seq11309 Length=11884 Score = 80.6 bits (88), Expect = 3e-11 Identities = 68/83 (82%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 12743 TTAACCCTTTAACGCTTCTGGGCGTTTCCCCCACTCTTGGTGGAA---CGCCTTCTACAT 12799 |||||| || |||||| || ||||||||||| ||||| |||||| | |||| ||| | Sbjct 10139 TTAACCTGTTCACGCTTTTGAGCGTTTCCCCCGCTCTTAGTGGAACCCCTCCTTTTACGT 10198 Query 12800 TTACTTTACACCCTCCCCACTCC 12822 |||||| |||| ||||||||||| Sbjct 10199 TTACTTCACACGCTCCCCACTCC 10221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48610822828104