Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq4988 228 8e-56 seq7776 201 1e-47 seq8319 89.7 5e-14 seq8017 89.7 5e-14 seq4848 80.6 3e-11 >seq4988 Length=5228 Score = 228 bits (252), Expect = 8e-56 Identities = 262/347 (76%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 |||| | |||| ||||| ||| || || ||||||||||||||||||||||||||| | Sbjct 27 TTTTATAGAATTACTTTTAAACGACT--ACTGATCAATTCCAAAAACTAATCAGCTCTCA 84 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 ||||||| |||||||||| || ||| | | | ||||| ||||| ||||||| || || Sbjct 85 ACATCAAGAAACCACGTCAATCGCCGCTAGCCCGGTCACAATCGATTGATTCTTTTATGA 144 Query 15612 GATATC---GTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATT 15668 | |||| || | ||| ||||| ||||||| ||||| ||| | |||| ||||||| Sbjct 145 GTTATCATTGTCGAAAAAAAAAAACAGAAAAAAATGTTTATTCTGAATTATATCGAAATT 204 Query 15669 TTCGGTTCGATCAATTAAAACCTGAAAATAACTTATGAGG-ATGATAAAACTGCGTCGAA 15727 ||||||| |||||||| || | |||||||| ||| |||||| ||||||| Sbjct 205 CATACTTCGATCGATTAAAACTCAAAGACTCTTTATGAGGCCTGA-AAAACTACGTCGAA 263 Query 15728 TGGCACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTC 15787 || |||||||||| ||| |||| || |||||||||| |||| | ||| | |||| Sbjct 264 TGATGCCAACCGCGTAAAAAACGGTTAATTCATTCAAAAG-TATTTTGATTTTAGAATTT 322 Query 15788 CAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGGAG 15834 | ||||| |||| ||| ||||||||| |||| ||||||| | |||| Sbjct 323 AAGAAATAATGTTATATTAAACTTTTACCAGATTTTTGAGTTCGGAG 369 Score = 168 bits (186), Expect = 7e-38 Identities = 227/308 (74%), Gaps = 11/308 (4%) Strand=Plus/Plus Query 1253 CAAAAACTAATCAGCTCTTAACCATGAA-AACCCCCATCGATCGCCAGCAAAAACGTT-A 1310 |||||||||||||||||| ||| || || || || | || |||||| || | || | | Sbjct 65 CAAAAACTAATCAGCTCTCAAC-ATCAAGAAACCACGTCAATCGCC-GCTAGCCCGGTCA 122 Query 1311 GAATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatc----gaaaaaaGTGtt 1366 ||||| ||||| | || |||| |||| ||||||||||||| ||||||| |||| Sbjct 123 CAATCGATTGATTCTTTTATGAGTTATCATTGTCGAAAAAAAAAAACAGAAAAAAATGTT 182 Query 1367 tttttGTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGG 1426 | || ||| | ||||||||||| |||||||||| || || || | | |||||| Sbjct 183 TATTCTGAATTATATCGAAATTCATACTTCGATCGATTAAAACTCAAAGACTCTTTATGA 242 Query 1427 AGCTTCAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAA 1486 || | ||||||| |||||| || ||||||||||| |||| ||||| ||| |||||||| Sbjct 243 GGCCTGAAAAACTACGTCGAATGATGCCAACCGCGTAAAAAACGGTTAATTCATTCAAAA 302 Query 1487 GTTATTGCCGTTTGAAAATTCAAAAAAT--TGTGTCTTTAAACTGCTATTAGAGTTTTGA 1544 | |||| ||| | |||| || |||| ||| ||||||| || ||| |||||| Sbjct 303 G-TATTTTGATTTTAGAATTTAAGAAATAATGTTATATTAAACTTTTACCAGATTTTTGA 361 Query 1545 GCTCGAAG 1552 | ||| || Sbjct 362 GTTCGGAG 369 >seq7776 Length=24510 Score = 201 bits (222), Expect = 1e-47 Identities = 198/248 (80%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 394 TCTTCTATCCTCTGATCCCCCATGGTA-CCGCCGTAAGGCATTTCTTCGCGGG-GGGAGG 451 || ||| || ||||||||| | |||| ||||||| ||||||| ||||| ||| |||| | Sbjct 21120 TCCTCTGACCACTGATCCCC-ACGGTATCCGCCGTTAGGCATTACTTCGTGGGAGGGAAG 21062 Query 452 AATTAGCTGCCGCTCTTCCTTCTGGTGGCTAAGATGTTATTTCTTC---CTTCTAG---T 505 | |||||| | |||||||||||||| |||||||||||||||| || ||||||| | Sbjct 21061 ATTTAGCTACTACTCTTCCTTCTGGTAGCTAAGATGTTATTTCCTCTTTCTTCTAGATGT 21002 Query 506 TTCTGTCATTCGCTC-TTTTCTTCTCAATGGATTGCAACTCGGTAAGCACTTTTGTAGCA 564 | |||||||||||| ||||||| || |||||| ||| || ||||| || | ||| ||| Sbjct 21001 TGTTGTCATTCGCTCGTTTTCTT-TCGATGGATCGCAGGTCTGTAAGGACCTCTGTTGCA 20943 Query 565 AAAGTGCTTGTGGCGTTCCAGGCAGCTTCTGATGACAGCATTGCTGCTACTATTATCTCT 624 || | |||| | |||||| | || |||| ||| |||| ||||||| |||||| | ||||| Sbjct 20942 AATGCGCTTATAGCGTTCTATGCGGCTTTTGACGACAACATTGCTTCTACTAGTGTCTCT 20883 Query 625 GGTTGGAT 632 |||||||| Sbjct 20882 GGTTGGAT 20875 Score = 116 bits (128), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 748 TTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGT 807 || || |||||| |||||| | ||| | | || ||||| ||||||| || |||||| Sbjct 20824 TTGTCGTGCTTGAAGCGGTATAAGTACTCTTGAAAGCAGCCATGTCCTGGTAGCATCTGC 20765 Query 808 GTAAGATAATAGTTGACCTCACCGTG-ACTCCGGTTTAGCCAAACGTTGATCCTTGGTAT 866 || ||||| ||| ||||||||||||| | || || ||||| | || ||||| |||||| Sbjct 20764 GTTAGATAGTAGCTGACCTCACCGTGCGTTACGATTCAGCCAGATGTCGATCCGTGGTAT 20705 Query 867 GAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAGTTGCCATCG 920 || ||||| ||||| || | || ||| ||||||||||| ||||||||| Sbjct 20704 TAGGCGATGTGTCCACCTGGCTTTTGCTGCAGCATCCCACTGGGATTGCCATCG 20651 Score = 114 bits (126), Expect = 1e-21 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 49 TTTTTAACTTCCCGCTAA--AAATCTGAGATTTTCAAAAATCGGGAAGTTATTGTTCTCA 106 |||||||||||||||||| |||| | |||||| ||||||||||||| | || | | | Sbjct 21768 TTTTTAACTTCCCGCTAAGAAAATTGAAAATTTTCTAAAATCGGGAAGTCACTGGTTTTA 21709 Query 107 CCCCATTTTACAAAAATCGAGTTTTCATCAGATCTCGACGTTTGAAGGTCACAGAAAGCT 166 |||| |||| ||||||||||||| |||||||||||||||| | ||||| || || || Sbjct 21708 CCCCGTTTTGCAAAAATCGAGTTCTCATCAGATCTCGACGATCCGAGGTCTTAGGAACCT 21649 Query 167 TCCCTGA 173 ||||| Sbjct 21648 CTCCTGA 21642 Score = 95.1 bits (104), Expect = 1e-15 Identities = 94/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 15491 ATTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTT 15550 ||||||| ||||||| | ||| ||| ||||||||||| ||||||||||| ||||| Sbjct 19248 ATTTTTTCAAATAACTCTAAAACGACTCGACCGATCAATTGTAAAAACTAATCGGCTCTG 19189 Query 15551 AACATCAAAAAAC---CACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTC 15607 | || ||||||| |||||| |||||| | || | ||| | |||||||||||||||| Sbjct 19188 GA-ATTAAAAAACAAACACGTCAATTGCCGCAAACCGAGTCCACATCGGTTGATTCGTTC 19130 Score = 80.6 bits (88), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 8/118 (7%) Strand=Plus/Minus Query 368 TACCCACTAAACCCTAAACCCCTTTCTCTTCTATCCTCTGATCCCCCATGGTA-CCGCCG 426 |||| |||||| ||| || | || ||| || ||||||||| | |||| |||||| Sbjct 21242 TACCGACTAAAACCT-----CCGCTATCCTCTGACCACTGATCCCC-ACGGTATCCGCCG 21189 Query 427 TAAGGCATTTCTTCGCGGG-GGGAGGAATTAGCTGCCGCTCTTCCTTCTGGTGGCTAA 483 | ||||||| ||||| ||| |||| || |||||| | |||||||||||||| ||||| Sbjct 21188 TTAGGCATTACTTCGTGGGAGGGAAGATTTAGCTACTACTCTTCCTTCTGGTAGCTAA 21131 >seq8319 Length=10389 Score = 89.7 bits (98), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 1418 TTTTTATGGAGCTTCAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATT 1477 ||||||| |||| | |||| || || || | || |||| |||| ||| || ||| Sbjct 2614 TTTTTATAGAGCATGAAAA-CTATATCAATCGTCGTTTACCGGACGAAACTCGATTAATT 2556 Query 1478 TATTCAAAAGTTATTGCCGTTTGAAAATTCAAAAAA--TTGTGTCTTTAAACTGCTATTA 1535 |||||||||||| || ||||||||||| |||||| |||| || | |||| | || | Sbjct 2555 CATTCAAAAGTTACAGCAGTTTGAAAATTGAAAAAATCTTGTTTCATCAAACGGACATCA 2496 Query 1536 GAGTTTTGAGCTCGAAGAGCTCA 1558 || |||||||| |||||||||| Sbjct 2495 GATTTTTGAGCCGGAAGAGCTCA 2473 >seq8017 Length=23477 Score = 89.7 bits (98), Expect = 5e-14 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 1366 ttttttGTAATAACTTCGAAATTCATGGCTC-GATCGATT--TAATCTTGAAAATTTTTT 1422 |||||| |||| | ||| ||| | || | || |||||||| || ||| ||||| Sbjct 10687 TTTTTTTTAATTA-TTCCAAAATAATCGATCTGATCGATTAGTAGCTTTGGT--TTTTTC 10743 Query 1423 ATGGAGCTTCAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTC 1482 || ||| |||||| | |||||||| | |||| | ||||||||| ||| ||| Sbjct 10744 ATAATACTTGAAAAACACCAACGATTGCCTCAAACCAGATCAAAATCGGTCGATTCATTT 10803 Query 1483 AAAAGTTATTGCCGTTTGAAAATTCAAAAAATTGTGTCTT--TAAACTGCTATTAGAGTT 1540 ||| ||| || |||| ||||||||| ||| |||| || | |||| ||| | | || Sbjct 10804 GTAAGGTATGGCAGTTTCAAAATTCAATGAATAGTGTTTTATTCAACTTTTATCAAACTT 10863 Query 1541 TTGAGCTCGAAGAGCTCAAA 1560 |||||||||| ||||||||| Sbjct 10864 TTGAGCTCGATGAGCTCAAA 10883 Score = 87.8 bits (96), Expect = 2e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15745 AAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGTGTTCTAT 15804 |||| ||| ||| |||| ||| ||| || |||| ||||||| | ||||||||| ||| Sbjct 10786 AAATCGGTCGATTCATTTGTAAGGTATGGCAGTTTCAAAATTCAATGAATAGTGTTTTAT 10845 Query 15805 GAAACTTTTATCAGACTTTTGAGCTGGGAGAGCTCAAA 15842 ||||||||||| ||||||||||| | ||||||||| Sbjct 10846 TCAACTTTTATCAAACTTTTGAGCTCGATGAGCTCAAA 10883 >seq4848 Length=25154 Score = 80.6 bits (88), Expect = 3e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 15761 TCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGAC 15820 ||||| |||| || ||||||||||| |||||| |||| ||| |||| | ||||||| Sbjct 16496 TCAAACGTTACAGCAGTTTGAAAATTAAAAAAATCCTGTTTTATCAAACGGTCATCAGAC 16555 Query 15821 TTTTGAGCTGGGAGAGCTCAAA 15842 |||| |||||| |||||||||| Sbjct 16556 TTTTAAGCTGGAAGAGCTCAAA 16577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50943297641616