Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006643.1 Length=12903 Score E Sequences producing significant alignments: (Bits) Value seq2384 147 2e-31 seq4989 143 2e-30 seq4395 143 2e-30 seq3382 78.8 8e-11 >seq2384 Length=3294 Score = 147 bits (162), Expect = 2e-31 Identities = 147/182 (81%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 3586 ATCCCAGTCCGAGCTATCTAATAATTTTTTCTCGCATATTCTATAAACTCACATTAAGAT 3645 ||||||| |||| |||| ||| ||||||| |||||||||||||||| |||| |||| Sbjct 2446 ATCCCAGCTCGAGTTATCCCG-AATCTTTTCTCACATATTCTATAAACTCCCATTGAGAT 2504 Query 3646 GATCCTCTCCACAATCCTTTCTCAATCCTT-TCCTACCAATTATCCTGTTACGTGA--AT 3702 | |||| ||| | || || ||||||||||| |||| || || ||||| |||||| | Sbjct 2505 GGTCCTTTCCTC-ATTCTCTCTCAATCCTTATCCTTCC--CTACCCTGTCACGTGAGGAA 2561 Query 3703 GTTGGAACGCTTCACGTAATAATTATC-CGTAACTCCTATTCTTTCCCGCTTCACAGCAT 3761 | ||||||||||||||||||||||| | ||||||| | | ||||||| |||| ||||||| Sbjct 2562 G-TGGAACGCTTCACGTAATAATTACCTCGTAACTTCCACTCTTTCCTGCTTTACAGCAT 2620 Query 3762 TA 3763 || Sbjct 2621 TA 2622 >seq4989 Length=1177 Score = 143 bits (158), Expect = 2e-30 Identities = 131/159 (82%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 3608 AATTTTTTCTCGCATATTCTATAAACTCACATTAAGATGATCCTCTCCACAATCCTTTCT 3667 ||| ||||||| |||||||||||||||| |||| ||||| |||| ||| | || || ||| Sbjct 1173 AATCTTTTCTCACATATTCTATAAACTCCCATTGAGATGGTCCTTTCCTC-ATTCTCTCT 1115 Query 3668 CAATCCTT-TCCTACCAATTATCCTGTTACGTGA-ATGTTGGAACGCTTCACGTAATAAT 3725 |||||||| |||| || || ||||| |||||| | ||||||||||||||||||||| Sbjct 1114 CAATCCTTATCCTTCC--CTACCCTGTCACGTGAGAAAGTGGAACGCTTCACGTAATAAT 1057 Query 3726 TATC-CGTAACTCCTATTCTTTCCCGCTTCACAGCATTA 3763 || | ||||||| | | ||||||| |||| ||||||||| Sbjct 1056 TACCTCGTAACTTCCACTCTTTCCTGCTTTACAGCATTA 1018 >seq4395 Length=14685 Score = 143 bits (158), Expect = 2e-30 Identities = 132/160 (83%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 3608 AATTTTTTCTCGCATATTCTATAAACTCACATTAAGATGATCCTCTCCACAATCCTTTCT 3667 ||| ||||||| |||||||||||||||| |||| ||||| |||| ||| | || || ||| Sbjct 3842 AATCTTTTCTCACATATTCTATAAACTCCCATTGAGATGGTCCTTTCCTC-ATTCTCTCT 3784 Query 3668 CAATCCTT-TCCTACCAATTATCCTGTTACGTGA--ATGTTGGAACGCTTCACGTAATAA 3724 |||||||| |||| || || ||||| |||||| | | |||||||||||||||||||| Sbjct 3783 CAATCCTTATCCTTCC--CTACCCTGTCACGTGAGGAAG-TGGAACGCTTCACGTAATAA 3727 Query 3725 TTATC-CGTAACTCCTATTCTTTCCCGCTTCACAGCATTA 3763 ||| | ||||||| | | ||||||| |||| ||||||||| Sbjct 3726 TTACCTCGTAACTTCCACTCTTTCCTGCTTTACAGCATTA 3687 Score = 87.8 bits (96), Expect = 1e-13 Identities = 92/116 (79%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 3586 ATCCCAGTCCGAGCTATCTAATAATTTTTTCTCGCATATTCTATAAACTCACATTAAGAT 3645 ||||||| |||| |||| ||| ||||||| |||||||||||||||| |||| |||| Sbjct 3963 ATCCCAGCTCGAGTTATCCCG-AATCTTTTCTCACATATTCTATAAACTCCCATTGAGAT 3905 Query 3646 GATCCTCTCCACAATCCTTTCTCAATCCTT-TCCTACCAATTATCCTGTTACGTGA 3700 | |||| ||| | || || ||||||||||| |||| || || ||||| |||||| Sbjct 3904 GGTCCTTTCCTC-ATTCTCTCTCAATCCTTATCCTTCC--CTACCCTGTCACGTGA 3852 Score = 78.8 bits (86), Expect = 8e-11 Identities = 68/81 (84%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 3686 TATCCTGTTACGTGA--ATGTTGGAACGCTTCACGTAATAATTATC-CGTAACTCCTATT 3742 || ||||| |||||| | || |||||||||||||||||||||| | ||||||| | | | Sbjct 3668 TACCCTGTCACGTGAGGAAGT-GGAACGCTTCACGTAATAATTACCTCGTAACTTCCACT 3610 Query 3743 CTTTCCCGCTTCACAGCATTA 3763 |||||| |||| ||||||||| Sbjct 3609 CTTTCCTGCTTTACAGCATTA 3589 >seq3382 Length=350 Score = 78.8 bits (86), Expect = 8e-11 Identities = 68/81 (84%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 3686 TATCCTGTTACGTGA--ATGTTGGAACGCTTCACGTAATAATTATC-CGTAACTCCTATT 3742 || ||||| |||||| | || |||||||||||||||||||||| | ||||||| | | | Sbjct 267 TACCCTGTCACGTGAGGAAGT-GGAACGCTTCACGTAATAATTACCTCGTAACTTCCACT 209 Query 3743 CTTTCCCGCTTCACAGCATTA 3763 |||||| |||| ||||||||| Sbjct 208 CTTTCCTGCTTTACAGCATTA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41168815516128