Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq7776 161 6e-36 seq8017 86.0 4e-13 seq4395 80.6 1e-11 seq5299 78.8 5e-11 >seq7776 Length=24510 Score = 161 bits (178), Expect = 6e-36 Identities = 112/127 (88%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1068 TCAGGGAAGCTTCCTATGACCTTAAAACGTCGAGATCTGATGAAAACTCGATTTTTGCAA 1127 ||||| || |||||| ||||| | |||||||||||||||| |||||||||||||||| Sbjct 21642 TCAGGAGAGGTTCCTAAGACCTCGGATCGTCGAGATCTGATGAGAACTCGATTTTTGCAA 21701 Query 1128 AACGGGGTGAAAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAG 1187 |||||||| ||| || | ||||||||||||| |||||| ||||||||||||||||||||| Sbjct 21702 AACGGGGTAAAACCAGTGACTTCCCGATTTTAGAAAATTTTCAATTTTCTTAGCGGGAAG 21761 Query 1188 TTAAAAA 1194 ||||||| Sbjct 21762 TTAAAAA 21768 >seq8017 Length=23477 Score = 86.0 bits (94), Expect = 4e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1094 ACGTCGAGATCTGATGAAAACTCGATTTTTGCAAAACGGGGTGAAAACAATAACTTCCCG 1153 |||| ||||||| |||| ||||||||||| |||||||||||||||| |||| |||||| | Sbjct 9622 ACGTTGAGATCTAATGAGAACTCGATTTTAGCAAAACGGGGTGAAACCAATGACTTCCTG 9563 Query 1154 ATTTT 1158 ||||| Sbjct 9562 ATTTT 9558 >seq4395 Length=14685 Score = 80.6 bits (88), Expect = 1e-11 Identities = 175/249 (70%), Gaps = 16/249 (6%) Strand=Plus/Minus Query 231 ATGACGGACAGGAAAAtt-ttttgacctattttgatgttttttttCGTTTCTAGTGCACT 289 |||| ||||||||| || ||||||| ||||||||| ||||||| || || | | Sbjct 6409 ATGATTGACAGGAAATTTCTTTTGAC-TATTTTGATATTTTTTTCTAATTTTATTATGTT 6351 Query 290 AAATCAATTTTTGAAA--AGTG-TCAAATTAATCTCTATTAAATTATCTTGACAATAGTA 346 ||| | ||| ||| |||| | |||||||||| |||||||||||| ||||| Sbjct 6350 AAACCGATTC---AAACCAGTGATAAAATTAATCTTCATTAAATTATCTATCAAATAG-- 6296 Query 347 TGCAAAATATCTTGAA--TCCGTGAACTAACAA-GACTATAATGATGAAAATAGTTGCCG 403 |||| | | | || | |||| | || || | || | ||||||| | || || Sbjct 6295 TGCACAGGTTTATAAAATTACGTGGATTATTAACCATGTTATTAATGAAAA-AATTTACG 6237 Query 404 AAAT-GAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAG 462 |||| |||| ||||||||| || | ||||| |||||| | ||| ||| ||| ||||| Sbjct 6236 AAATCGAGG-AAAAAAAATTATTTGTTCGTAGAGCACTTCTTAATGCTTCGCATTATGAG 6178 Query 463 TCATGCAAT 471 || |||||| Sbjct 6177 TCGTGCAAT 6169 >seq5299 Length=8648 Score = 78.8 bits (86), Expect = 5e-11 Identities = 173/244 (71%), Gaps = 18/244 (7%) Strand=Plus/Minus Query 237 GACAGGAAAAtt-ttttgacctattttgatgttttttttCGTTTCTAGTGCACTAAATCA 295 ||||||||| || ||||||| ||||||||| ||||||| || || | |||| | Sbjct 7771 GACAGGAAATTTCTTTTGAC-TATTTTGATATTTTTTTCTAATTTTATTATGTTAAACCG 7713 Query 296 ATTTTTGAAA--AGTG-TCAAATTAATCTCTATTAAATTATCTTGACAATAGTATGCAAA 352 ||| ||| |||| | |||||||||| |||||||||||| ||||| |||| | Sbjct 7712 ATTC---AAACCAGTGATAAAATTAATCTTCATTAAATTATCTATCAAATAG--TGCACA 7658 Query 353 ATATCTTGAA--TCCGTGAACTAACAA-GACTATAATGATGAAAATAGTTGCCGAAAT-G 408 | | || | |||| | || || | || | ||||||| | || |||||| | Sbjct 7657 GGTTTATAAAATTACGTGGATTATTAACCATGTTATTAATGAAAA-AATTTACGAAATCG 7599 Query 409 AGGTGaaaaaaaTTTTTCGATCGTAAAGCAC-TCTCTGATGTTTCTCATCATGAGTCATG 467 ||| ||||||||| || | ||||| ||||| ||| | ||| ||| ||| ||||||| || Sbjct 7598 AGG-AAAAAAAATTATTTGTTCGTAGAGCACATCT-TAATGCTTCGCATTATGAGTCGTG 7541 Query 468 CAAT 471 |||| Sbjct 7540 CAAT 7537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27993002794016