Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006654.1 Length=13597 Score E Sequences producing significant alignments: (Bits) Value seq7744 91.5 1e-14 >seq7744 Length=16608 Score = 91.5 bits (100), Expect = 1e-14 Identities = 59/64 (92%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 174 AGTCTTATGAACGTGGACTTGGCGCGAttttttttACAGTGAAACTGTTTTTGTTCGGAT 233 |||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||| Sbjct 11756 AGTCTTATGAACGTGGACTTGGCGCGGTTCTTT--ACAGTGAAACTGTTTTTGTGCGGAT 11699 Query 234 TTTA 237 |||| Sbjct 11698 TTTA 11695 Score = 89.7 bits (98), Expect = 4e-14 Identities = 166/249 (67%), Gaps = 21/249 (8%) Strand=Plus/Plus Query 4223 CGGAGACCTCAAATACTGTCAGCAAGTATCAAAAGATTGCAAATCATTAGCACTACGATT 4282 |||||| ||||| || || ||||||||||| |||||||| ||||||||| | ||| | Sbjct 15891 CGGAGAGCTCAAGTATTGGGAGCAAGTATCAGAAGATTGCCCATCATTAGCGCGGCGAAT 15950 Query 4283 ATTACCAGCAGTATTCAACAGCAAAGCATTGAGTGTTTGTTTATCAATTACTGAGAGAGC 4342 ||| || | ||||| || || || |||||||| ||| ||| || ||||| | || Sbjct 15951 CTTAAGAGAGTTGTTCAAGAGAAACGCTTTGAGTGTATGTGCATCGATGACTGAAAAAG- 16009 Query 4343 GCAGGCTTCTGATAATGTTCGATCTAATGCAAGGCCAGAATTAGATGATCACGCGTGTTC 4402 | | |||| |||||| ||||| |||| ||||| || | Sbjct 16010 --------------------AACCCAATGGAAGGCCCAAATTACATGAACACGCATGCGC 16049 Query 4403 GGCACTGTTAAATTTCGTTTTAGAACACGGACTACAACGTGGTTGGAATACTGACCTGCA 4462 | ||| | ||| ||| | | || ||| | ||||| |||||| |||||| |||| Sbjct 16050 AGTCCTGATCGATTATGTTATTGGCCAAGGAGTTAAACGTCATTGGAACACTGACATGCA 16109 Query 4463 ACCTATCCT 4471 |||||| || Sbjct 16110 ACCTATTCT 16118 Score = 86.0 bits (94), Expect = 5e-13 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 13296 AATCCGAACAAAAACAGTTTCACTGTaaaaaaaaTCGCGCCAAGTCCACGTTCATAAGAC 13355 |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 11698 AATCCGCACAAAAACAGTTTCACTGTAAAGAAC--CGCGCCAAGTCCACGTTCATAAGAC 11755 Query 13356 T 13356 | Sbjct 11756 T 11756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 43385951263680