Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_006655.1 Length=15279 Score E Sequences producing significant alignments: (Bits) Value seq9109 131 2e-26 seq7574 131 2e-26 seq11309 113 4e-21 seq6273 95.1 1e-15 seq7744 84.2 2e-12 >seq9109 Length=10878 Score = 131 bits (144), Expect = 2e-26 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 8361 ATTAACCCTTTAACGCTGAATTGGCCCTCAGTGTCCCGCGCGGCACCGGAGTGGGGAGCG 8420 |||||| |||||| ||| | | |||||| | | |||| ||||||||||||||| Sbjct 10514 ATTAACTCTTTAAAAGCGAACTTGGACTCAGTATGACTTGCGGTGCCGGAGTGGGGAGCG 10455 Query 8421 TGTAAAGTAAATGTAGAAGGAGGCGTTCCACTAAGAGTGGGGGGAACGCCCAGAAGCGTT 8480 ||||| ||||||||||||||||||| ||||| || |||||||| || ||||| ||||||| Sbjct 10454 TGTAAGGTAAATGTAGAAGGAGGCGGTCCACCAAAAGTGGGGGAAAAGCCCACAAGCGTT 10395 Query 8481 AAAGGGTTAA 8490 |||||||||| Sbjct 10394 AAAGGGTTAA 10385 >seq7574 Length=4130 Score = 131 bits (144), Expect = 2e-26 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 8361 ATTAACCCTTTAACGCTGAATTGGCCCTCAGTGTCCCGCGCGGCACCGGAGTGGGGAGCG 8420 |||||| |||||| ||| | | |||||| | | |||| ||||||||||||||| Sbjct 382 ATTAACTCTTTAAAAGCGAACTTGGACTCAGTATGACTTGCGGTGCCGGAGTGGGGAGCG 441 Query 8421 TGTAAAGTAAATGTAGAAGGAGGCGTTCCACTAAGAGTGGGGGGAACGCCCAGAAGCGTT 8480 ||||| ||||||||||||||||||| ||||| || |||||||| || ||||| ||||||| Sbjct 442 TGTAAGGTAAATGTAGAAGGAGGCGGTCCACCAAAAGTGGGGGAAAAGCCCACAAGCGTT 501 Query 8481 AAAGGGTTAA 8490 |||||||||| Sbjct 502 AAAGGGTTAA 511 >seq11309 Length=11884 Score = 113 bits (124), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 8362 TTAACCCTTTAACGCTGAATTGGCCCTC-AGTGTCCCGCGCGGCACCGGAGTGGGGAGCG 8420 |||||||||||| || | | ||| ||||| | ||||| | ||||||||||||| Sbjct 10268 TTAACCCTTTAAAAACAAAGTTGGACTCGAGTGTGACTCGCGGTGCTGGAGTGGGGAGCG 10209 Query 8421 TGTAAAGTAAATGTAGAAGGAGGCGTTCCACTAAGAGTGGGGGGAACGCCCAGAAGCGTT 8480 ||| ||||||| ||| ||||||| ||||||||||||| ||||| ||||| || |||||| Sbjct 10208 TGTGAAGTAAACGTAAAAGGAGGGGTTCCACTAAGAGCGGGGGAAACGCTCAAAAGCGTG 10149 Query 8481 AAAGGGTTAAGC 8492 || |||||||| Sbjct 10148 AACAGGTTAAGC 10137 >seq6273 Length=7777 Score = 95.1 bits (104), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 4715 TCTACCACCGGAATATGATCCT--CGTGATACCAGATGGACATTGAAGTATCGAACAAAT 4772 ||||||||| || ||||||||| || ||||| ||||| ||||| || | |||| Sbjct 3296 TCTACCACCAGAGTATGATCCTGCCGCGATACATCATGGATTCTGAAGCATGAAGAAAAT 3355 Query 4773 CTGCCAGGACTCGTAGAACTTACGCCTCAAAGTGGTGTTTACGTCAGCTACGGAGACCTC 4832 ||| || ||| ||||||| |||| | | | |||| | | | |||||| ||| Sbjct 3356 AAGCCTGGGCTCAAAGAACTTGTGCCTTATACCCGCATTTATATAAAATTCGGAGAGCTC 3415 Query 4833 AAATACTGTCAGCAAGTATCAAAAGATTGCCAATCATTAGCGAAGCGATTATTA 4886 || || || ||||||||||| ||||||||| |||||||||| |||| | ||| Sbjct 3416 AAGTATTGGGAGCAAGTATCAGAAGATTGCCCATCATTAGCGCGGCGAATCTTA 3469 Score = 80.6 bits (88), Expect = 3e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4823 CGGAGACCTCAAATACTGTCAGCAAGTATCAAAAGATTGCCAATCATTAGCGAAGCGATT 4882 |||||| ||||| || || ||||||||||| ||||||||| |||||||||| |||| | Sbjct 3506 CGGAGAGCTCAAGTATTGGGAGCAAGTATCAGAAGATTGCCCATCATTAGCGCGGCGAAT 3565 Query 4883 ATTATCAGCAGTATTTAACAGAAAAGCACTAAGTGTTTGTTTCTCAATGACTGAGAAAG 4941 ||| || | || || ||||| || | ||| | ||| || |||||||| |||| Sbjct 3566 CTTAAGAGAGTTGTTCAAGAGAAACGCTTTGAGTTTATGTGCATCGATGACTGAAAAAG 3624 >seq7744 Length=16608 Score = 84.2 bits (92), Expect = 2e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4823 CGGAGACCTCAAATACTGTCAGCAAGTATCAAAAGATTGCCAATCATTAGCGAAGCGATT 4882 |||||| ||||| || || ||||||||||| ||||||||| |||||||||| |||| | Sbjct 15891 CGGAGAGCTCAAGTATTGGGAGCAAGTATCAGAAGATTGCCCATCATTAGCGCGGCGAAT 15950 Query 4883 ATTATCAGCAGTATTTAACAGAAAAGCACTAAGTGTTTGTTTCTCAATGACTGAGAAAG 4941 ||| || | || || ||||| || | ||||| ||| || |||||||| |||| Sbjct 15951 CTTAAGAGAGTTGTTCAAGAGAAACGCTTTGAGTGTATGTGCATCGATGACTGAAAAAG 16009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48767600970576