Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq2339 86.0 2e-13 seq4783 84.2 8e-13 seq11843 80.6 9e-12 seq11206 78.8 3e-11 >seq2339 Length=158549 Score = 86.0 bits (94), Expect = 2e-13 Identities = 144/214 (67%), Gaps = 13/214 (6%) Strand=Plus/Plus Query 3954 GAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGG 4013 ||||||| | ||||| | ||||||||| || |||| || || ||||| | Sbjct 109064 GAAAGCGACGACTTTTGTCCCGCTGCGCGGGACCAAGTCCCCGTTTTTCGGCTCTG---- 109119 Query 4014 GTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTTTG 4073 |||||||| || |||| ||| || ||| ||| | |||||||||| ||||||| Sbjct 109120 --AGAAAAATCGTATACACACCATGGGCAGTAAATAAGGAAGCCTCAGATCACATGTAAT 109177 Query 4074 TTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTTTTG 4133 | | | |||| | ||| |||||||||||||||||| ||| Sbjct 109178 TGTCGTCCGAGGTGGAGCC-------TCGGACGACAATTACATGTGATCTGAGACCTTTC 109230 Query 4134 TTATTTTTCTGGCCTACGTATGTAATATACTATT 4167 || |||| ||| |||| ||||||||||||||||| Sbjct 109231 TTGTTTTACTGCCCTAGGTATGTAATATACTATT 109264 >seq4783 Length=42542 Score = 84.2 bits (92), Expect = 8e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 |||| | ||| |||||||||||||||||| || || |||| ||| |||| ||||||||| Sbjct 14405 TCGGACGACAATTACATGTGATCTGAGACCTTCCTTGTTTTACTGCCCTAGGTATGTAAT 14346 Query 4160 ATACTATTCTT 4170 ||||||||||| Sbjct 14345 ATACTATTCTT 14335 >seq11843 Length=95169 Score = 80.6 bits (88), Expect = 9e-12 Identities = 105/152 (69%), Gaps = 9/152 (6%) Strand=Plus/Minus Query 4016 AGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTTTGTT 4075 |||||||| || |||| ||| ||| ||| ||| | |||||||||| |||||||| || Sbjct 6888 AGAAAAATCGTATACACACCACGGGCAGTAAATAAGGAAGCCTCAGATCACATGTTAGT- 6830 Query 4076 TGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTTTTGTT 4135 |||| | |||| ||||||||||||||||| || || Sbjct 6829 --------CGACCTCGGCTCCGCCTCGGACGACAGCTACATGTGATCTGAGACCTTCCTT 6778 Query 4136 ATTTTTCTGGCCTACGTATGTAATATACTATT 4167 |||| ||| |||| ||||||||||||||||| Sbjct 6777 GTTTTACTGCCCTAGGTATGTAATATACTATT 6746 >seq11206 Length=250997 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 |||| | ||| |||||||||||||||||| || || |||| ||| |||| ||||||||| Sbjct 70848 TCGGACGACAATTACATGTGATCTGAGACCTTCCTTGTTTTACTGCCCTAGGTATGTAAT 70789 Query 4160 ATACTATT 4167 |||||||| Sbjct 70788 ATACTATT 70781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17581681329800