Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1005 118 2e-21 seq11508 86.0 9e-12 >seq1005 Length=228466 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||||||||||||||| || || ||||| || ||||| || | || Sbjct 172196 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCTTGGAAGTTGAGGCCTC 172255 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||||| || ||| || || || || || ||||| || ||||| || Sbjct 172256 TGACAGCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 172315 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||||||| | ||| ||||| || ||||||||| | | ||| | || || || || Sbjct 172316 GCAGCGATTGATCTTTGCGGGTAAACAACTCGAAGATGGCCGCACTCTGTCTGACTACAA 172375 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 172376 CATTCAGAAGGAGTCGACCCTTCAT 172400 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| |||||||| | ||||| || || ||||| || ||||| || | | Sbjct 171282 AACATGCAGATCTTTGTTAAAACACTAACTGGTAAGACCATTACCTTGGAAGTTGAGGCT 171341 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||||| || |||||| || || || || ||||| || ||||| Sbjct 171342 TCCGACAGCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGCATTCCCCCAGAC 171401 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||||| ||||| ||||||||||| ||| Sbjct 171402 CAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGAT 171440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||||||||| || || || ||||| || | ||| Sbjct 171741 ATGCAAATTTTCGTCAAGACCCTCACTGGAAAAACCATCACGTTGGAAGTTGAGGCTTCC 171800 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| || || || || || || || ||||| ||| Sbjct 171801 GACAGCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAA 171860 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||||||||| || || ||||||||||| || Sbjct 171861 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAGGA 171895 >seq11508 Length=54009 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| | || || || || || || | ||||| || | ||| Sbjct 27838 AATGCAGATCTTTGTCAAAACCCTCACGGGCAAGACCATCACTCTGGAAGTTGAGGCTTC 27779 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||| || || || || |||||||| || ||||| || Sbjct 27778 CGACACAATCGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA 27719 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| ||||| ||||||||||| || |||||| | || || || || Sbjct 27718 GCAGCGACTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTGTCGGACTACAA 27659 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| |||| || ||| Sbjct 27658 CATCCAAAAAGAGTCGACCCTCCAT 27634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731761706889600