Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11508 84.2 2e-11 >seq11508 Length=54009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||||||||| || ||||| || || |||| ||||| || Sbjct 28066 AATGCAGATTTTCGTGAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAG-GCGT 28008 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || ||||| | || ||||| ||| || ||||| ||||| | || ||| Sbjct 28007 CGGACACGATTGAGAAC--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCACCGGA 27950 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || || || | || ||||||||||| || | || |||| |||| | ||||| || Sbjct 27949 TCAACAGCGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTA 27890 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || || ||| ||| | ||||||||| ||||| | || || || Sbjct 27889 CAACATTCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGTCTCCGAGGTGG 27839 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || || || ||| || || | || ||||| | | Sbjct 27610 AATGCAAATCTTTGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTCGAGGCCTC 27551 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || |||| | ||| ||||| ||||| |||||||| || | || ||| Sbjct 27550 GGATACGATCGAAAAT--GTCAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCGGAT 27493 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || ||||||| || || ||||| | || || | |||| | ||||| ||| Sbjct 27492 CAACAGCGACTAATTTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTCTCCGACTAC 27433 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| |||| | ||| | ||| | ||| ||||||| ||| Sbjct 27432 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGTCTGCGTGGAGGC 27382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355810112247912