Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocentrus_20cingulum_20[genbank_20GCA_5F002156465.1_202017-05-22] 12,056 sequences; 127,916,415 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11508 98.7 9e-16 seq1005 86.0 5e-12 >seq11508 Length=54009 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || | ||||| || || ||| || || || ||||| ||||| | Sbjct 26927 CCTCCTCGCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGAC 26986 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || |||| || |||||||| || || || || || ||||||||||| |||||| Sbjct 26987 AACGTGCGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 27046 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||||| ||| ||| || | || | | ||| || | ||| || Sbjct 27047 -ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCAGAGGCCTCGAC 27105 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||| || ||||| || ||||||||||| Sbjct 27106 CTCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATTTGCAT 27153 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || || | |||| ||| || || ||||||||| || || || || | Sbjct 27611 CCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCGAC 27670 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || |||| |||| || ||||| || || || || || || ||||||||||| |||||| Sbjct 27671 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTGGG 27730 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| || ||||| || | | || ||| | ||| || Sbjct 27731 -ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCGATTGTGTCGGAAGCCTCAAC 27789 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || ||||| || ||||| |||||||| ||||| Sbjct 27790 TTCCAGAGTGATGGTCTTGCCCGTGAGGGTTTTGACAAAGATCTGCAT 27837 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || || | |||| ||| || || ||||||||| || || || || | Sbjct 27155 CCACCTCGCAAACGGAGGACCAGATGGAGGGTCGACTCTTTTTGGATGTTGTAGTCCGAC 27214 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || |||| |||| || ||||| || || || || || || ||||||||||| |||||| Sbjct 27215 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCTGGTGGG 27274 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||||| ||| ||| || | || | | ||| || | ||| || Sbjct 27275 -ATGCCCTCTTTGTCCTGGATCTTCGCCTTTACGTTCTCGATCGTGTCAGAGGCCTCAAC 27333 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||| || ||||| || || || ||||| Sbjct 27334 CTCAAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAAATCTGCAT 27381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||| || || || | || || ||||| Sbjct 27406 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCGAGCTG 27465 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 ||| || || || || || ||||| || || |||||| | || ||||||||| |||| Sbjct 27466 TTTACCAGCGAAAATTAGTCGCTGTTGATCCGGTGGG-ATGCCCTCTTTGTCTTGAATTT 27524 Query 39200 TCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| | | | |||||| | ||| || || | ||||| |||| |||| Sbjct 27525 TGGCCTTGACATTTTCGATCGTATCCGAGGCCTCGACCTCGAGGGTGATGGTTTTACCCG 27584 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| |||||||||||||| Sbjct 27585 TGAGGGTTTTTACAAAGATTTGCAT 27609 >seq1005 Length=228466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | | || || || ||||| || || ||| || | Sbjct 171754 ACGAAAATTTG--CATGCCTCCACGCAGACGCAAGACTAAATGCAGGGTCGACTCCTTCT 171697 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | || || || | || || |||||||| |||||||| || | | Sbjct 171696 GAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGTTTACCCGCAAAGATCAATC 171637 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||||| | || | | ||| |||||| |||||| |||| | | | | Sbjct 171636 GCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATAG 171577 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||| | ||| || || | ||||| |||| || ||||| ||||| |||||||| | Sbjct 171576 TGTCGGAGGCCTCGACCTCGAGAGTGATTGTTTTACCAGTCAGAGTTTTGACAAAGATCT 171517 Query 39281 GCAT 39284 |||| Sbjct 171516 GCAT 171513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||||| | | || || |||||||| || || ||| || Sbjct 172212 TAACAAAAATTTG--CATTCCTCCACGCAGACGCAAGACCAAATGCAGGGTCGACTCCTT 172155 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || || || | || || || | || || || ||||| |||||||| || | Sbjct 172154 CTGAATGTTGTAGTCAGACAGGGTGCGGCCATCTTCGAGTTGTTTACCCGCAAAGATCAA 172095 Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217 ||||||||||| |||||| | | ||| |||||| |||||| |||| | | | Sbjct 172094 TCGCTGCTGGTCTGGTGGG-ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAA 172036 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 || ||| | ||| || || | || || |||| || ||||| ||||| ||||||| Sbjct 172035 TAGTGTCGGAGGCCTCGACCTCGAGAGTAATTGTTTTACCAGTCAGAGTTTTGACAAAGA 171976 Query 39278 TTTGCAT 39284 | ||||| Sbjct 171975 TCTGCAT 171969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429482485791128