Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4228 542 3e-149 seq5451 84.2 3e-11 >seq4228 Length=62806 Score = 542 bits (600), Expect = 3e-149 Identities = 1186/1757 (68%), Gaps = 42/1757 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || || || ||||||||||| ||||| | ||| | ||||| | || ||| Sbjct 20067 GCAGGTTTTGTGCGAAGGTAGTACATTCCTGTTTTCAAACCCATTTTCCATGCATAGAAA 20008 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || | ||| || | || || || | ||||||||| | || || ||| Sbjct 20007 TGAATAGATGACAATTTACCGTAGTTTGGTTCAGCAACATGGATATTAAAGGACTGGCTT 19948 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 |||||||| || || || ||||| |||||||||| ||| | || ||| | ||||||| Sbjct 19947 TGATCGATAAATGCACCTCTGTCGGCAGCCATTTGTATTGTAGTTTTTACAGAAATTTCC 19888 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATAGA 53064 || | ||||||||| || || |||| | |||| |||| | || || || ||||||| Sbjct 19887 CAGACAGTTTTATACAAGTCTCTTATT-TCTTTAGGAATAGATTCAATGCTTTGAATAGA 19829 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || || || ||| || || || || | |||||| | || ||||| Sbjct 19828 TCCATTATTGTGGATTATAAGATTTTTCATATCTTCGTCCCATAAATCAGCTTCAGTTAA 19769 Query 53125 AAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | | | ||| || || |||| || ||||| || || || ||||| || | | || Sbjct 19768 ATCATGTAACAAG-TGATGATTCACCACTTGGAACTCACCCGACAAGACACGTCTTTGGT 19710 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 | || || ||| | ||||| | || |||||||||||||| || || || || || | Sbjct 19709 ATATGTTTGATGTAAAAGGTTCAAATGATTCATTATTTCCCAATATCTGTGCTGTGGAAG 19650 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATC 53301 |||| ||||||||||| | ||||| |||||||||||| ||||| || || || || Sbjct 19649 CAGTTGGCATAGGTGCTAGCAATAGTGAATTTCTAAGACC--ATGTTTTGCAATCTTCTC 19592 Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 |||||| | ||||| | ||| | ||| | || || | Sbjct 19591 TTTTAGTGAATCCCAGTCCCACAAATCTGTTGGGGTCTTGTTCCACATGTCATACTGCAA 19532 Query 53362 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||||| | || || ||| |||| || || ||| ||| | |||||| |||| Sbjct 19531 TATACCTTGGCTTGCAGGGCTGCCTTCATAAGTCTCATATACTCCATGCTTCTCGGCTAA 19472 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 |||||| || ||||| | |||||| || || || ||||| || || | | ||||| || Sbjct 19471 TTCACAGCTAGCCTCCAGTGCACCATAGTAGATTGTTTCAAATATTTGTTGATTTA-ATT 19413 Query 53482 TTGT----GCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTA 53534 || | ||||| ||| ||| |||| || |||| || ||| || || |||| Sbjct 19412 TTATAGCAGCTTC---GCTTTCATATGGTATGCGCATTAA---AACAAAAGCATCAGCTA 19359 Query 53535 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 53594 |||||||||| ||||| || || ||||| || ||| |||| || ||| || ||||| | Sbjct 19358 ATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCATATTTGATTTTTTTGCCTCTGGCA 19299 Query 53595 TAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACC-ACA 53653 || ||| | || | ||| |||||||| || || || || | || ||| | || Sbjct 19298 CTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATT-CTCAGTTATAGTTTTAGTGACT 19240 Query 53654 TCCTTCAGTTTGAGAAAATCAAATTGTC---CATCTATTACAAACATGTTCAATGCAATA 53710 || |||| ||||| ||||| || | |||| |||||||||| || |||||||| Sbjct 19239 TCTTTCAATTTGATAAAATTGTATGTTTTATCATCATTTACAAACATATTTAATGCAATT 19180 Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || || | ||| || || || || |||| || | ||||| || || ||||||||| Sbjct 19179 GAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGTATATTCTACAATTTCAGTGCAA 19120 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 || || || || || ||||| |||| ||| | || ||||| ||| |||| || | ||| Sbjct 19119 AGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTTACTTTTTCTGTTGCATGAATCT 19060 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 |||||||| ||| |||| || || ||||||| || | ||| || || |||||||| | Sbjct 19059 TTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGCTTCAATTATAGCTTTCCACAAA 19000 Query 53891 ACACGAGCCT----TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 53946 || |||| || || || | | || || ||| ||| |||||| Sbjct 18999 ACCTGAGCTCGCACTTGTTTTACAAAGCGACCT----TCCTGTTCATATTTCTCATACAA 18944 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 | |||||| || ||||||||| || | || ||||| || |||| |||||||| | Sbjct 18943 TGCTTCAAATTCTTCTCCCCAACAATCGGATAAACCAGGGCAATCATGAGGACACATTAT 18884 Query 54007 CGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 ||| ||| | | | |||| ||| ||||||||| | ||| || ||||| | || Sbjct 18883 ACTCCAATCTTGATTA-CTTTCAACTCTTTTCATAAATAAATCTGGTATCCATAAGGCAT 18825 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||| || || || | | ||| || || || ||||||||||| | ||| || || Sbjct 18824 AAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAGTATTCTTTTTCAAATCCAGAAATT 18765 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | || |||| |||||| |||||||| ||||||| | | ||||| | ||| || | Sbjct 18764 CAAATATGTCAGCATGCCATGGTTCCAAATATATGGCAAATGCGCCAGGTCTTTTATTAC 18705 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 |||| ||||| | ||| | || ||||| || |||||||| ||||| || | || ||||| Sbjct 18704 CTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAACTCTTAACATCGGCACAAGACCAT 18645 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 54305 | || ||||||| || || | ||||| | || ||| | |||| || | Sbjct 18644 TCGACACACCATTTGTACCAGCTATATAAGTACCTTTGGATCTAATACAGTGAACATGGA 18585 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 | || ||||| ||||| |||||| |||| ||| ||| |||||| |||||||| || | Sbjct 18584 GGCCAATCCCACCTGCTGATTTAGAAATTAGTGCACATTGTTTTAGAGTATCATAAATTC 18525 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 | || ||||||||||| ||||| | || || || ||||| ||| |||| | Sbjct 18524 CTTCAATACTATCATCTTTCATGGCTATAAGGAAGCAAGAAGACAGTTGAGGACGTGGGG 18465 Query 54426 TTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 | | || | | | ||| || || || || ||||| |||||||||| |||| |||| Sbjct 18464 TCGCTGC-TGAGAAAAGAGTTGGGCTTGCATGTGTAAAATATTTTTCAGATAGTAAATTG 18406 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | |||||| ||| ||||| |||||| || | | || | ||| | | Sbjct 18405 TATGTGTTAATAGCTCCGTCAATATCTTCACCATGAATGCCAATGGAAACCCTCATGAGC 18346 Query 54545 ATGTGCTGAGGTCTTTC 54561 |||||||| || ||||| Sbjct 18345 ATGTGCTGCGGCCTTTC 18329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 ||||| ||||||||||||| ||| || | ||| | ||| || || || || |||||||| Sbjct 16052 TTTTTGGTTTCTTTGTGTAAATTAGAAATGGCCAATCTTGCAGCAAGTATTGCATAATCT 15993 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||||| || |||||| ||||||| | | | || | ||| || ||| Sbjct 15992 GGATGATCAGTAGTCATGGTTGCTGCTGTTTCGGCAGCTAAGTTATCAAGTTCCACAGTT 15933 Query 54899 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 || ||||| ||||| || ||| || |||| || ||| Sbjct 15932 GTCACTCCCGAGTATATCCCACTGATGACTTTCAGAGTTAT 15892 >seq5451 Length=979821 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/375 (65%), Gaps = 3/375 (1%) Strand=Plus/Plus Query 147323 TTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGG 147382 ||||| |||||||||| | || ||||| || ||| | || | || || | | || Sbjct 213638 TTTCTCTTATGACTCCTGTGCTACCAATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGG 213697 Query 147383 CATTTAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTAC 147442 || | ||||| | ||| |||||||| | ||| | ||||| || || || ||||| | Sbjct 213698 CAATGAAAAAGTGTCCCAATGGAATGTTCTCAGAAATAAAATATGACGGTGAAAGAGTGC 213757 Query 147443 AAGTTCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCT 147502 |||| || ||||| || ||||| | ||| ||| | |||||||| | Sbjct 213758 AAGTGCACAAAAAAGGGAATGAGTTCAAATATTTCTCAAGAGCGTTAAAACCAGTTATGG 213817 Query 147503 CTTATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTA 147562 | | ||||| | || |||| || || ||||| |||| || ||||| |||| | Sbjct 213818 CACACAAAGTCAGTCATTTCAAGGATTATTTACCGCAAGCTTTCCCAAAAGGTACGGACA 213877 Query 147563 TCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTG 147619 | || ||||| ||||| || | | ||||| | ||| || ||| | || || | Sbjct 213878 TGATACTGGATGCTGAAGTTTTGATGGTAGATGTGAATACTGGGAAGCCATTGCCATTCG 213937 Query 147620 GAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGT 147679 | | |||||| |||| || | ||||| ||| | | | ||||| ||| | | Sbjct 213938 GTACATTAGGTGTACATAAGCGGTCAGAATTCAAAGATGCACAAGTGTGTCTGTACATAT 213997 Query 147680 TTGACTGTTTGTACT 147694 ||||||||||||||| Sbjct 213998 TTGACTGTTTGTACT 214012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593077567915920