Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1544 116 2e-21 seq4140 104 2e-17 seq4167 100 2e-16 >seq1544 Length=14195 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||| ||| | ||| |||||| || ||||||||||| || Sbjct 3032 CCACCACGGAGACGCAAGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAA 3091 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||| ||||| |||||||| || ||||||||||| ||| Sbjct 3092 AGGGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATAAGACGCTGCTGGTCTGGGGGG 3151 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | ||| | | || || Sbjct 3152 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAGGGCTCAACT 3211 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||| || | ||||| |||||||||||||| Sbjct 3212 TCCAGGGTGATGGTTTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 3258 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || || | |||| ||| ||||| ||||||||||| || Sbjct 3488 CCTCCTCGAAGACGCAGTACAAGATGGAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 3547 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 3548 AGGGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGG 3607 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||||| || | |||| || | | ||| || Sbjct 3608 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCAATCGTGTCCGAAGGTTCAACC 3667 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || | ||||| ||||| |||||||| Sbjct 3668 TCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACAAAAATCTGCAT 3714 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || || ||||||||||| ||| ||| | || |||||||||||||| ||||| Sbjct 4207 TTCCTTTTGGATATTGTAGTCGGAAAGCGTACGACCATCTTCCAACTGCTTGCCGGCGAA 4266 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 4267 GATCAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATT 4326 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| || || || | ||||| || Sbjct 4327 CTCAATAGTGTCAGAAGGTTCAACCTCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGAC 4386 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 4387 AAAGATCTGCAT 4398 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || || | |||| ||| ||||| ||||||||||| || Sbjct 3716 CCTCCTCGAAGACGCAGTACAAGATGGAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 3775 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| ||||| || || ||||| ||||| ||| Sbjct 3776 AGGGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCTGGGGGG 3835 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | ||| || Sbjct 3836 ATGCCTTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACC 3895 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || | ||||| |||||||||||||| Sbjct 3896 TCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACAAAGATCTGCAT 3942 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || || ||||||||||| || || | || |||||||||||||| ||||| Sbjct 3295 TTCCTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCTTCCAACTGCTTGCCGGCGAA 3354 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| ||| | || |||||||| ||||| ||||| || Sbjct 3355 GATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATT 3414 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| || | | ||| || || | |||||||| || || || | ||||| || Sbjct 3415 TTCAATCGTGTCCGAAGGTTCAACCTCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGAC 3474 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 3475 AAAAATCTGCAT 3486 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || || | || ||||| |||||||| ||||| Sbjct 4663 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCCAATTGCTTGCCGGCGAA 4722 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 4723 GATCAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 4782 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || || | || || |||||||| || || ||||| || Sbjct 4783 CTCAATAGTATCAGAAGGCTCCACTTCTAGTGTTATTGTTTTGCCTGTCAGTGTTTTTAC 4842 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 4843 GAAAATCTGCAT 4854 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || || | ||| ||| ||||| || |||||||| || Sbjct 3944 CCACCTCGAAGACGCAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAG 4003 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||| ||||| || ||||| || || ||||||||||| ||| Sbjct 4004 AGGGTGCGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGACGCTGCTGGTCTGGGGGG 4063 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | |||| | |||||| Sbjct 4064 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTGTCGGAAGGTTCGACC 4123 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || | || || || || |||||||| Sbjct 4124 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4170 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| ||| ||||| ||||||||||| ||| Sbjct 5084 CCACCACGAAGACGCAGTACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5143 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| || || |||||||| || || Sbjct 5144 AGTGTGCGGCCGTCTTCTAGCTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGTGGA 5203 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| || ||| || |||| || | || | || | | || || Sbjct 5204 ATGCCTTCTTTGTCTTGAAT-TTTAGCTTTTACATTTTCAATAGTGTCTGAGGGCTCAAC 5262 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | |||||||| || |||||||| Sbjct 5263 TTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACGAAAATCTGCAT 5310 >seq4140 Length=56097 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||||| ||| | || ||| ||||| ||||||||||| || || ||| Sbjct 50437 AGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 50378 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || |||||||| || || ||||| || || |||||||| || || | | |||| Sbjct 50377 CCATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGTGGGATTCCCTCC 50318 Query 34292 TTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 ||||| ||| |||||||| | || | || | || | | || || || | || Sbjct 50317 TTGTCCTGGATC-TTTGCTTTGACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGT 50259 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||| || ||||| ||||| || ||||||||||| Sbjct 50258 GATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 50220 >seq4167 Length=57674 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | ||| ||| ||||| || ||||||||||| || || | || Sbjct 17797 CAGCACCAGGTGAAGTGTAGATTCCTTCTGGATATTGTAGTCGGATAGAGTGCGTCCATC 17856 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||| || ||||| || | | |||||||||| || | || |||||||| Sbjct 17857 TTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 17916 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| || ||||| | || | || | ||| | | ||| || |||| ||||| | Sbjct 17917 TTGAATC-TTAGCTTTAACATTTTCGATGGTATCAGAGGGTTCCACCTCCAAAGTGATTG 17975 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || | ||| ||||| ||||||||||| Sbjct 17976 TTTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 18009 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || | ||| | ||| ||||||||||||||| || || || Sbjct 14135 CCACCACGCAGACGCAGTACTAAGTGGAGAGTGGATTCTTTCTGTATGTTATAATCTGAG 14194 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||||||| ||||| || ||||| | | ||||||||| || Sbjct 14195 AGCGTACGACCATCTTCCAACTGTTTGCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGG 14254 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| || ||| ||||| | || | || | || | | |||||| Sbjct 14255 ATCCCCTCTTTGTCTTGGAT-TTTGGCTTTCACATTTTCGATTGTGTCCGAGGCTTCGAC 14313 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||| || |||||||| || ||||| ||||| Sbjct 14314 TTCTAGTGTAATGGTCTTGCCCGTCAGAGTTTTAACGAAGATTTGCAT 14361 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||||||||| | | ||| | || |||||||| ||||| ||||| Sbjct 16906 TTCTTTCTGGATATTGTAGTCGGATAACGTACGCCCATCTTCCAACTGTTTGCCGGCGAA 16965 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| || ||||| ||||| || | | |||||||| || ||||||||| | || Sbjct 16966 AATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTGTCCTGGAT-TTTTGCTTTGACAT 17024 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | ||| || || | || ||||| ||||| || ||||| || | Sbjct 17025 TTTCAATTGTATCAGAGGCTTCAACTTCTAGTGTTATGGTCTTGCCAGTCAGAGTCTTGA 17084 Query 34377 CAAAGATCTGCAT 34389 | || || ||||| Sbjct 17085 CGAATATTTGCAT 17097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322730312894240