Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4228 531 6e-146 seq5451 93.3 5e-14 >seq4228 Length=62806 Score = 531 bits (588), Expect = 6e-146 Identities = 1190/1764 (67%), Gaps = 56/1764 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || || || ||||||||||| ||||| | ||| | ||||| | || ||| Sbjct 20067 GCAGGTTTTGTGCGAAGGTAGTACATTCCTGTTTTCAAACCCATTTTCCATGCATAGAAA 20008 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| | | ||| || | || || || | ||||||||| | || || ||| Sbjct 20007 TGAATAGATGACAATTTACCGTAGTTTGGTTCAGCAACATGGATATTAAAGGACTGGCTT 19948 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || ||||| |||||||||| ||| | || ||| | ||||||| Sbjct 19947 TGATCGATAAATGCACCTCTGTCGGCAGCCATTTGTATTGTAGTTTTTACAGAAATTTCC 19888 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 62302 || | ||||||||| || || |||| | |||| |||| | || || || |||| || Sbjct 19887 CAGACAGTTTTATACAAGTCTCTTATT-TCTTTAGGAATAGATTCAATGCTTTGAATAGA 19829 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || || || ||| || || || || | |||||| | || ||||| Sbjct 19828 TCCATTATTGTGGATTATAAGATTTTTCATATCTTCGTCCCATAAATCAGCTTCAGTTAA 19769 Query 62363 AAC-TCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | | | ||| || || | || || |||||||| || || ||||| || | | || Sbjct 19768 ATCATGTAACAAG-TGATGATTCACCACTTGGAACTCACCCGACAAGACACGTCTTTGGT 19710 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 | || || ||| | ||||| | || |||||||||||||| || || || || || | Sbjct 19709 ATATGTTTGATGTAAAAGGTTCAAATGATTCATTATTTCCCAATATCTGTGCTGTGGAAG 19650 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATC 62539 |||| ||||||||||| | ||||| |||||||||||| ||||| || || || || Sbjct 19649 CAGTTGGCATAGGTGCTAGCAATAGTGAATTTCTAAGACC--ATGTTTTGCAATCTTCTC 19592 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNNNNNNAT 62592 |||||| ||||| | ||| | ||| | || | | ||| || Sbjct 19591 TTTTAGTGAATCCCAGTCCCACAAATCTGTTGGGGTCTTGTTCCACATGTC-------AT 19539 Query 62593 ATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCT 62652 | || | ||||| | || || ||| |||| || |||||| ||| | ||||| Sbjct 19538 ACTGCAATATACCTTGGCTTGCAGGGCTGCCTTCATAAGTCTCATATACTCCATGCTTCT 19479 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 | |||| || ||| || ||||| | |||||| || || || |||||||| || | | || Sbjct 19478 CGGCTAATTCACAGCTAGCCTCCAGTGCACCATAGTAGATTGTTTCAAATATTTGTTGAT 19419 Query 62713 TTAGATCTTGT----GCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCG 62765 ||| || || | ||||| ||| ||| |||| || |||| || ||| || Sbjct 19418 TTA-ATTTTATAGCAGCTTC---GCTTTCATATGGTATGCGCATTAA---AACAAAAGCA 19366 Query 62766 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62825 || |||||||||||||| ||||| || || ||||| || ||| |||| || ||| || Sbjct 19365 TCAGCTAATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCATATTTGATTTTTTTGCC 19306 Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885 ||||| | || ||| | || | ||| |||||||| || ||||| || | || ||| Sbjct 19305 TCTGGCACTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATT-CTCAGTTATAGTTTT 19247 Query 62886 ACC-ACATCCTTCAGTTTGAGAAAATCAAATCGCC---CATCTATTACAAACATGTTCAA 62941 | || || |||| ||||| ||||| || |||| |||||||||| || || Sbjct 19246 AGTGACTTCTTTCAATTTGATAAAATTGTATGTTTTATCATCATTTACAAACATATTTAA 19187 Query 62942 TGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 63001 ||||| || || | ||| || || || || |||| || | ||||| || || || Sbjct 19186 TGCAATTGAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGTATATTCTACAATTTC 19127 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||||||| || || || || || || |||| ||| | || ||||| ||| |||| || Sbjct 19126 AGTGCAAAGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTTACTTTTTCTGTTGCA 19067 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 | ||| |||||||| ||| |||| || || ||||||| || | ||| || || ||||| Sbjct 19066 TGAATCTTTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGCTTCAATTATAGCTTT 19007 Query 63122 CCAGACGACTCGAGCCT----TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 ||| | || |||| || || || | | |||| || || | ||| Sbjct 19006 CCACAAAACCTGAGCTCGCACTTGTTTTACAAAGCGA---CCTTCCTGTT-CATATTTCT 18951 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 ||||||| ||| || || ||||||||| || | || | ||| || |||| |||| Sbjct 18950 CATACAATGCTTCAAATTCTTCTCCCCAACAATCGGATAAACCAGGGCAATCATGAGGAC 18891 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAA 63296 |||| | ||| ||| | | | |||| ||| ||||||||| | ||| || ||||| Sbjct 18890 ACATTATACTCCAATCTTGATTA-CTTTCAACTCTTTTCATAAATAAATCTGGTATCCAT 18832 Query 63297 AGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63356 | || ||| || || || | | ||| || || || ||||||||||| | ||| Sbjct 18831 AAGGCATAAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAGTATTCTTTTTCAAATCC 18772 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63416 || || | | || |||| |||||| |||||||| |||||||| | | ||||| | | Sbjct 18771 AGAAATTCAAATATGTCAGCATGCCATGGTTCCAAATATATGGCAAATGCGCCAGGTCTT 18712 Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || ||||| ||||| | ||| | || ||||| || |||||||| ||||| || | | Sbjct 18711 TTATTACCTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAACTCTTAACATCGGCACA 18652 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 | ||| || || | |||||| ||||| | ||||| || ||| | |||| | Sbjct 18651 AGACCATTCGACACACCATTTGTACCAGCTATATAAGTACCTTTGGATCTAATACAGTGA 18592 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63596 | || || || || ||||| |||||| |||| ||| ||| |||||| || ||| Sbjct 18591 ACATGGAGGCCAATCCCACCTGCTGATTTAGAAATTAGTGCACATTGTTTTAGAGTATCA 18532 Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 || || ||||| || |||||||| ||||| | || || || ||||| ||| || Sbjct 18531 TAAATTCCTTCAATACTATCATCTTTCATGGCTATAAGGAAGCAAGAAGACAGTTGAGGA 18472 Query 63657 CGAGTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 || | || | || | | | ||| || || || || ||||| |||||||||| || Sbjct 18471 CGTGGGGTCGCTGC-TGAGAAAAGAGTTGGGCTTGCATGTGTAAAATATTTTTCAGATAG 18413 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 || |||||| || | ||||||| ||| ||||| |||||| || | | || | Sbjct 18412 TAAATTGTATGTGTTAATAGCTCCGTCAATATCTTCACCATGAATGCCAATGGAAACCCT 18353 Query 63776 CATTAACATGTGCTGAGGTCTTTC 63799 ||| | ||||||||| || ||||| Sbjct 18352 CATGAGCATGTGCTGCGGCCTTTC 18329 >seq5451 Length=979821 Score = 93.3 bits (102), Expect = 5e-14 Identities = 246/375 (66%), Gaps = 3/375 (1%) Strand=Plus/Plus Query 155246 TTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGG 155305 ||||| |||||||||| | || ||||| || ||| | || | || || | | || Sbjct 213638 TTTCTCTTATGACTCCTGTGCTACCAATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGG 213697 Query 155306 CGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTAC 155365 | | ||||| | ||| |||||||| | ||| | ||||| || ||||||||||| | Sbjct 213698 CAATGAAAAAGTGTCCCAATGGAATGTTCTCAGAAATAAAATATGACGGTGAAAGAGTGC 213757 Query 155366 AAGTTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCT 155425 |||| || |||||| || ||||| || || ||| | |||||||| | Sbjct 213758 AAGTGCACAAAAAAGGGAATGAGTTCAAATATTTCTCAAGAGCGTTAAAACCAGTTATGG 213817 Query 155426 CTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTA 155485 | || ||||| | || |||| || || ||||| |||| || ||||| |||| | Sbjct 213818 CACACAAAGTCAGTCATTTCAAGGATTATTTACCGCAAGCTTTCCCAAAAGGTACGGACA 213877 Query 155486 TCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTG 155542 | || ||||| ||||| || | | ||||| | ||| || || | || || | Sbjct 213878 TGATACTGGATGCTGAAGTTTTGATGGTAGATGTGAATACTGGGAAGCCATTGCCATTCG 213937 Query 155543 GAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGT 155602 | | |||||| |||| || | ||||| ||| | | | ||||| ||| | | | Sbjct 213938 GTACATTAGGTGTACATAAGCGGTCAGAATTCAAAGATGCACAAGTGTGTCTGTACATAT 213997 Query 155603 TTGACTGTTTATACT 155617 |||||||||| |||| Sbjct 213998 TTGACTGTTTGTACT 214012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629134413231120